MmuEX6099081 @ mm10
Exon Skipping
Gene
ENSMUSG00000057914 | Cacnb2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:MGI Symbol;Acc:MGI:894644]
Coordinates
chr2:14972062-14981457:+
Coord C1 exon
chr2:14972062-14972120
Coord A exon
chr2:14975130-14975239
Coord C2 exon
chr2:14981306-14981457
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTTTTTCTCCAACAGGAT
3' ss Score
11.91
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GTCACAGATATGATGCAAAAAGCACTGTTTGATTTTCTAAAACACAGATTTGAAGGGCG
Seq A exon
GATATCCATCACAAGAGTCACTGCTGACATCTCCCTTGCCAAACGCTCAGTATTAAACAATCCCAGTAAGCATGCAATCATAGAAAGATCCAACACAAGGTCCAGCTTAG
Seq C2 exon
CGGAAGTTCAGAGTGAAATTGAAAGGATTTTTGAACTTGCAAGAACACTGCAATTGGTAGTCCTTGACGCGGATACAATTAATCACCCAGCTCAACTCAGTAAGACCTCTTTGGCCCCTATCATAGTGTACGTAAAGATTTCTTCTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057914_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.192 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.4=100)
A:
PF0062516=Guanylate_kin=FE(20.3=100)
C2:
PF0062516=Guanylate_kin=PD(22.3=91.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTGTTTGATTTTCTAAAACACA
R:
TGGGAGAAGAAATCTTTACGTACACT
Band lengths:
189-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types