RnoEX0016174 @ rn6
Exon Skipping
Gene
ENSRNOG00000018378 | Cacnb2
Description
calcium voltage-gated channel auxiliary subunit beta 2 [Source:RGD Symbol;Acc:67385]
Coordinates
chr17:82003640-82013619:+
Coord C1 exon
chr17:82003640-82003698
Coord A exon
chr17:82010473-82010582
Coord C2 exon
chr17:82013468-82013619
Length
110 bp
Sequences
Splice sites
3' ss Seq
GTTTTCCTTTTCTCCAATAGGAT
3' ss Score
11.54
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GTCACAGATATGATGCAAAAAGCACTGTTTGATTTTCTAAAACACAGATTTGAAGGACG
Seq A exon
GATATCCATCACAAGAGTTACTGCTGACATCTCCCTGGCCAAACGCTCAGTATTAAACAACCCCAGTAAGCACGCAATAATAGAAAGATCCAACACAAGGTCGAGCTTAG
Seq C2 exon
CGGAAGTTCAGAGTGAAATTGAAAGGATTTTTGAACTTGCAAGAACACTGCAATTGGTAGTCCTTGACGCGGATACAATTAATCACCCAGCTCAACTCAGTAAGACCTCTCTGGCCCCTATCATAGTGTATGTAAAGATTTCTTCTCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018378-'22-22,'22-20,23-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.202 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.4=100)
A:
PF0062516=Guanylate_kin=FE(20.3=100)
C2:
PF0062516=Guanylate_kin=FE(27.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCACTGTTTGATTTTCTAAAACAC
R:
TCTTTACATACACTATGATAGGGGCC
Band lengths:
178-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]