GgaEX6018731 @ galGal4
Exon Skipping
Gene
ENSGALG00000008591 | CACNB2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr2:19011401-19022148:-
Coord C1 exon
chr2:19022090-19022148
Coord A exon
chr2:19020382-19020491
Coord C2 exon
chr2:19011401-19011552
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATCTTATTTTATTTTTGCAGTAT
3' ss Score
7.98
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GTAACAGATATGATGCAAAAAGCATTATTTGATTTTTTAAAACATAGATTCGAAGGGCG
Seq A exon
TATATCAATTACAAGAGTCACAGCAGACATCTCGCTTGCCAAACGCTCAGTATTAAACAACCCCAGTAAGCATGCGATAATAGAGCGATCCAACACAAGATCAAGCTTAG
Seq C2 exon
CTGAAGTTCAGAGTGAAATTGAACGGATTTTTGAATTAGCAAGGACACTGCAGTTGGTAGTGCTCGATGCTGACACCATAAATCACCCAGCGCAGCTGAGCAAAACCTCTCTGGCACCCATTATAGTATACGTAAAGATTTCTTCTCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591-'11-20,'11-16,13-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.149 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
PF0062516=Guanylate_kin=FE(20.4=100)
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Skipping Isoform:
ENSGALT00000013988fB5704
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAAAACATAGATTCGAAGGGCG
R:
TCTTTACGTATACTATAATGGGTGCC
Band lengths:
162-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]