BtaEX6064451 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002280 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
Coordinates
chr13:33635916-33637134:+
Coord C1 exon
chr13:33635916-33636020
Coord A exon
chr13:33636504-33636552
Coord C2 exon
chr13:33637079-33637134
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCCTCTGCCCTTTAGGTT
3' ss Score
11.08
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGTAAACTTCATGATCCAGAAGGCATGGGAATTATTCCAAGAATAGTGCAAGATATTTTTAATTATATTTACTCCATGGATGAAAATTTGGAATTTCATATTAAG
Seq A exon
GTTTCATATTTTGAAATTTATTTGGATAAGATAAGGGACCTGTTAGATG
Seq C2 exon
TTTCAAAGACCAATCTTTCAGTTCATGAAGATAAAAATCGAGTTCCTTATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002280-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(10.9=100)
A:
PF0022518=Kinesin=FE(5.1=100)
C2:
PF0022518=Kinesin=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCATGATCCAGAAGGCATGG
R:
ATCTTCATGAACTGAAAGATTGGTCT
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]