RnoEX6053757 @ rn6
Exon Skipping
Gene
ENSRNOG00000017466 | Kif5b
Description
kinesin family member 5B [Source:RGD Symbol;Acc:621559]
Coordinates
chr17:54192856-54194326:+
Coord C1 exon
chr17:54192856-54192960
Coord A exon
chr17:54193593-54193641
Coord C2 exon
chr17:54194271-54194326
Length
49 bp
Sequences
Splice sites
3' ss Seq
GACTTTTCTTTGTGCTTTAGGTT
3' ss Score
10.84
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGTAAACTTCATGATCCAGAAGGCATGGGGATTATTCCAAGAATAGTGCAAGATATTTTTAATTATATTTACTCCATGGATGAAAATTTGGAATTTCATATTAAG
Seq A exon
GTTTCATATTTTGAAATATATTTGGATAAGATAAGGGACCTGTTAGATG
Seq C2 exon
TTTCAAAGACTAACCTTTCAGTCCATGAAGACAAAAACCGTGTTCCCTATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017466-'6-4,'6-3,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(10.9=100)
A:
PF0022518=Kinesin=FE(5.1=100)
C2:
PF0022518=Kinesin=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCAGAAGGCATGGGGAT
R:
AGGGAACACGGTTTTTGTCTTCA
Band lengths:
142-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]