GgaEX0010288 @ galGal3
Exon Skipping
Gene
ENSGALG00000007215 | E1C3A1_CHICK
Description
NA
Coordinates
chr2:14130444-14131296:+
Coord C1 exon
chr2:14130444-14130548
Coord A exon
chr2:14130904-14130952
Coord C2 exon
chr2:14131241-14131296
Length
49 bp
Sequences
Splice sites
3' ss Seq
TATTTGTTTCACACTTCTAGGTG
3' ss Score
10.05
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGGAAGCTTCACGACCCAGATGGGATGGGGATTATTCCAAGAATAGTACAAGATATCTTTAATTATATTTACTCTATGGATGAAAATCTTGAGTTTCATATTAAG
Seq A exon
GTGTCATATTTTGAAATATACTTGGATAAAATAAGGGACCTTTTGGATG
Seq C2 exon
TTTCAAAGACCAATCTTTCTGTTCATGAAGACAAAAATAGAGTTCCCTATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007215-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(10.9=100)
A:
PF0022518=Kinesin=FE(5.1=100)
C2:
PF0022518=Kinesin=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTTCACGACCCAGATGG
R:
TGTCTTCATGAACAGAAAGATTGGT
Band lengths:
136-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]