HsaEX0034606 @ hg19
Exon Skipping
Gene
ENSG00000170759 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:6324]
Coordinates
chr10:32327091-32328359:-
Coord C1 exon
chr10:32328255-32328359
Coord A exon
chr10:32327706-32327754
Coord C2 exon
chr10:32327091-32327146
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTTTTAAATTTGCCCTTTAGGTT
3' ss Score
10.68
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGTAAACTTCATGATCCAGAAGGCATGGGAATTATTCCAAGAATAGTGCAAGATATTTTTAATTATATTTACTCCATGGATGAAAATTTGGAATTTCATATTAAG
Seq A exon
GTTTCATATTTTGAAATATATTTGGATAAGATAAGGGACCTGTTAGATG
Seq C2 exon
TTTCAAAGACCAACCTTTCAGTTCATGAAGACAAAAACCGAGTTCCCTATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170759-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(10.9=100)
A:
PF0022518=Kinesin=FE(5.1=100)
C2:
PF0022518=Kinesin=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGATCCAGAAGGCATGGGA
R:
AGGGAACTCGGTTTTTGTCTTCA
Band lengths:
144-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)