BtaEX6064466 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020053 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]
Coordinates
chr13:34075710-34088400:-
Coord C1 exon
chr13:34088239-34088400
Coord A exon
chr13:34079710-34079912
Coord C2 exon
chr13:34075710-34075815
Length
203 bp
Sequences
Splice sites
3' ss Seq
CTACGATCCTTGTTTCACAGGAA
3' ss Score
7.93
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TAAAAGATGATGAATGCGACTCAGATGCAGAAAATGAACAAAACCATGATCCTAACGTTGAAGAGTTCCTGCAACAACAAGACACTGCAGTCATCTACCCCGAGGCACCCGAGGATGACCAGAGGCAGGGCACGCCGGAGGCCAGCGGGCATGATGAAAACG
Seq A exon
GAACACCAGATGCATTTTCCCAGTTGCTCACCTGTCCGTACTGTGACAGAGGATATAAACGCTTTACCTCTCTGAAAGAACACATTAAGTATCGCCACGAGAAGAACGAAGACAACTTCAGCTGCTCCCTGTGCAGTTACACGTTTGCATACAGAACCCAGCTCGAGCGCCACATGACCTCCCACAAATCAGGACGAGAGCAG
Seq C2 exon
AGACATGTGACGCAGTCTGGGGGTAATCGTAAATTCAAGTGCACTGAATGTGGAAAAGCTTTCAAATACAAACACCATCTAAAAGAGCACTTAAGAATCCACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020053-'13-17,'13-16,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.235 C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
PF056057=zf-Di19=WD(100=83.8)
C2:
PF134651=zf-H2C2_2=PU(38.5=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAAGATGATGAATGCGACTCAGA
R:
CACTGTGGATTCTTAAGTGCTCT
Band lengths:
268-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]