DreEX0086343 @ danRer10
Exon Skipping
Gene
ENSDARG00000013207 | zeb1b
Description
zinc finger E-box binding homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010621-1]
Coordinates
chr12:26668990-26673070:-
Coord C1 exon
chr12:26672915-26673070
Coord A exon
chr12:26669490-26669692
Coord C2 exon
chr12:26668990-26669101
Length
203 bp
Sequences
Splice sites
3' ss Seq
TTCATTTCTCTCTCTCTCAGGCA
3' ss Score
11.24
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
TGAAAGAGGAGTGCGTGTCGGATGAAGATGAGAGGAGCAGAGATGCTTTGGTTGAGGAGATGCTCCAGCAAGGAGACACCGCAGTCATCTTTCCAGAGGCTCCAGATGACGAACCGCGACAGGGCACACCAGAAACCAGCGGACATGATGAAAATG
Seq A exon
GCACGCCAGACTCATTTTCTCAGCTCCTCACCTGTCCGTACTGCTCTCGTGGCTACAAACGTTACACCTCACTGAAGGAGCACATTAAATACAGACACGAGAAGAGCGAGGACAACTTCAGCTGCTCTCTCTGCAGCTACACCTTTGCCTACAGAACACAGCTGGACAGACACATGACCGCACACAAAGCTGGCCGAGAACAG
Seq C2 exon
CGGCATGTTACTCAGTCAGGTGGAGGAGGGAATCGAAAGTTTAAATGCACTGAATGTGGCAAAGCCTTCAAGTACAAACACCACCTGAAAGAACACCTGCGCATCCACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013207-'8-6,'8-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.221 C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
PF056057=zf-Di19=WD(100=83.8)
C2:
PF134651=zf-H2C2_2=PU(38.5=26.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGAGGAGTGCGTGTCGG
R:
CACTGTGGATGCGCAGGTG
Band lengths:
268-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]