RnoEX0100917 @ rn6
Exon Skipping
Gene
ENSRNOG00000017863 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:RGD Symbol;Acc:3831]
Coordinates
chr17:54668681-54673744:-
Coord C1 exon
chr17:54673583-54673744
Coord A exon
chr17:54670652-54670854
Coord C2 exon
chr17:54668681-54668786
Length
203 bp
Sequences
Splice sites
3' ss Seq
AGCATCTCTTCCCTCCACAGGAA
3' ss Score
11.28
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TAAAAGATGACGAATGCGACTCAGATGCAGAAAACGAGCAAAACCATGATCCCAACGTGGAAGAGTTCCTGCAGCAACAGGACACCGCGGTCATCTACCCTGAGGCACCCGAGGAGGACCAGCGGCAGGGCACGCCAGAAGCCAGCGGTCATGATGACAATG
Seq A exon
GAACACCAGATGCATTTTCCCAGTTGCTCACCTGCCCGTATTGTGATAGAGGCTACAAGCGCTTTACCTCTTTGAAAGAACACATTAAGTACCGCCATGAGAAGAATGAAGACAACTTCAGCTGCTCCCTGTGCAGTTACACCTTTGCATACAGAACCCAGCTTGAACGTCATATGACATCACATAAGTCAGGAAGAGAGCAA
Seq C2 exon
AGACATGTGACACAGTCTGGAGGTAACCGTAAGTTCAAGTGCACCGAGTGTGGGAAAGCGTTCAAGTACAAACACCATCTGAAGGAGCACTTACGGATCCACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017863_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.255 C2=0.236
Domain overlap (PFAM):
C1:
NO
A:
PF056057=zf-Di19=WD(100=83.8)
C2:
PF134651=zf-H2C2_2=PU(38.5=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAAGATGACGAATGCGACTCAGA
R:
CACTGTGGATCCGTAAGTGCT
Band lengths:
268-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]