GgaEX6018559 @ galGal4
Exon Skipping
Gene
ENSGALG00000007260 | ZEB1
Description
zinc finger E-box-binding homeobox 1 [Source:RefSeq peptide;Acc:NP_990462]
Coordinates
chr2:14315679-14322507:-
Coord C1 exon
chr2:14322346-14322507
Coord A exon
chr2:14319425-14319627
Coord C2 exon
chr2:14315679-14315784
Length
203 bp
Sequences
Splice sites
3' ss Seq
ATGTTGTGTCTCCTGTGCAGGAA
3' ss Score
10.6
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TAAAAGAAGATGAATGTGATTCTGATGCAGAAAATGAACAGAACCATGACCCTAATGTTGAAGAATTCCTTCAACAAGAAGATACAGCTGTTATTTACCCTGAAGCACCTGAGGAGGACCAGAGACAAGGCACACCAGAAGCTAGTGGTCAGGATGAAAATG
Seq A exon
GAACGCCCGATGCATTTTCCCAGCTGCTCACTTGCCCGTACTGTGACAGAGGGTACAAACGCTTCACCTCTCTGAAGGAACACATTAAATACCGCCATGAAAAGAACGAGGATAACTTCAGTTGCTCCCTCTGCAGTTACACGTTTGCGTATAGAACACAGCTGGACCGCCACATGACGTCGCACAAGTCGGGACGAGATCAG
Seq C2 exon
AGACATGTGACGCAGTCCAGTGGTAATCGAAAATTCAAGTGCACTGAATGTGGAAAAGCTTTCAAATATAAACATCATCTAAAGGAACACCTACGAATCCACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007260-'18-16,'18-15,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.250 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
PF056057=zf-Di19=WD(100=83.8)
C2:
PF134651=zf-H2C2_2=PU(38.5=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAATGTGATTCTGATGCAGA
R:
ACTGTGGATTCGTAGGTGTTCC
Band lengths:
260-463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]