MmuEX6000056 @ mm9
Exon Skipping
Gene
ENSMUSG00000024238 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:MGI Symbol;Acc:MGI:1344313]
Coordinates
chr18:5748692-5761431:+
Coord C1 exon
chr18:5748692-5748853
Coord A exon
chr18:5758963-5759165
Coord C2 exon
chr18:5761326-5761431
Length
203 bp
Sequences
Splice sites
3' ss Seq
AGTATCTCTTCCTTCCACAGGAA
3' ss Score
10.84
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGAAAGACAACGAGTGTGACTCAGATGCAGAAAATGAGCAAAACCATGATCCGAATGTGGAAGAATTTCTGCAGCAACAAGACACCGCCGTCATTTATCCTGAGGCGCCCGAGGAAGACCAGCGGCAGGGCACACCAGAAGCCAGCAGTCATGATGAAAACG
Seq A exon
GAACACCAGATGCATTTTCCCAGTTGCTCACCTGCCCGTATTGTGATAGAGGCTACAAGCGCTTTACCTCTTTGAAAGAACACATTAAGTACCGCCATGAGAAGAACGAGGACAACTTCAGCTGCTCCCTGTGCAGTTACACCTTTGCATACAGAACCCAGCTTGAACGTCATATGACATCACATAAGTCAGGAAGAGAGCAA
Seq C2 exon
AGACATGTGACACAGTCTGGGGGAAACCGCAAGTTCAAGTGCACTGAATGCGGGAAGGCCTTCAAGTACAAACACCACCTGAAAGAGCACTTACGGATTCACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024238-'10-13,'10-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.232 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
PF056057=zf-Di19=WD(100=83.8)
C2:
PF134651=zf-H2C2_2=PU(38.5=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGACAACGAGTGTGACTCA
R:
CACTGTGAATCCGTAAGTGCTCT
Band lengths:
268-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: