RnoINT0167563 @ rn6
Intron Retention
Gene
ENSRNOG00000017863 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:RGD Symbol;Acc:3831]
Coordinates
chr17:54668681-54670854:-
Coord C1 exon
chr17:54670652-54670854
Coord A exon
chr17:54668787-54670651
Coord C2 exon
chr17:54668681-54668786
Length
1865 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
ATGCCAATTCTTTCTTCCAGAGA
3' ss Score
7.89
Exon sequences
Seq C1 exon
GAACACCAGATGCATTTTCCCAGTTGCTCACCTGCCCGTATTGTGATAGAGGCTACAAGCGCTTTACCTCTTTGAAAGAACACATTAAGTACCGCCATGAGAAGAATGAAGACAACTTCAGCTGCTCCCTGTGCAGTTACACCTTTGCATACAGAACCCAGCTTGAACGTCATATGACATCACATAAGTCAGGAAGAGAGCAA
Seq A exon
GTAAGTGTAGAAGCAGAGGCCACAACCTTCCCAGGCCTGGGCAGGCACAGGCGCAGTGCGGGAGCCTCGGGGAGGGTGGGCACGTGGATACTCAGGCATGCTGCCTGATGTATAGTCTAACAGACATGAGAGGGTGGTTTGTGAGCATTTTCTTCCTTGTGAGCCTTGCCATCCTAACTTAATTGTTTTGCATAAACCATTAAAAAGTATCCCTCAGAGGCTGTGAGGCTCTGGGGTATATTCTCTTAACATGGTCTGTGTAGGAAGAGAAATATTAGCTGTTAAATCACTTGCCTTCAGCTGTAATAAAATTGGGGGGAAGCTGTAATTTTTTAATTTTCTTCAAGGAAGAGAGTTCACTTAGTATTAACTACTGTGCTTATCTACGTAGTAAGGGGAGCTGCCTCCTCTAACGCTTTAAGTTTGAGAACTTGTAGTCTGAAGACTCATCTTTGATGGCTTCCTCTACTTCTCTATCACCATGCTCTTTCTAGAAGTATAAGCTATTTTAGCCATAGGTAACATCTAAAGTGTTGACTTTATATTTAAAATTAAAATCAAAGGAACTTTAGTAATTCTTTTTATAATGTCCTGGTTGGTAACAGTCAGCTTTCAGCAAGCAAGCTAATATGCATTTGACACTGACTTTACAAATCAAGTAACCATTTCACAGGATGCTGTGGCATAGGCCCAGGTTCCAGCACATGACCAATTCCTGTGTCACAGGGTTATGATCATACACCTGCTGAATGTGTGAGGACTTGGTGTAGGTTCCTAATACAGGCCGCTTATCCCACAGAGAGTGTTAGTGCCTTTGCTAACATCAACAGAAAAAGAAGACACAGAGTCAGCCTGTTTACTCAGGATTTGGTCATCACTCAAAAAATGTAATAATAAGAGGTAACAGGGAATGTGGAATAAAGGGGAGAACAGGGCTTTCAGCAGCGTAATCTAATGGGGAAACCCTGGGGACCATTGAGAGTGGGAGGCAACCAGAAACAAAGGAAGAAGCTGACCTGACAGGAGCTCCTGGGGACATGGGCTTGCTAAGGAGGTGTCCAGGGATGGTGCCATAGAGCACTCTCTGCTTTAGAGGCTGCTGCGTGCACAGCAGGGTAAAGGCCGAGGGAGAGAGAAGGCCACATGACTTTTGAAAGTAGACCCACGCTACACCTGCTGCCTCCCTCCTGGCTCAGTAGTGAGGACCCCTGCCAAAGAGCAGACAGAGGTCAGAGCTGAGGCAACACCATGAAAACAAACTCAAAATCCACAGTGACCATGATGGCTACTTTTGTGATGATTTTTCTGGTGGATGTGAACTAAAAGGAGCTGTGCTTGTGTGAAGGCCGGTATAATGAAGGATGGATGGTCTTGGAGACCCTTATGGAATGTTGGTCTTTCAGGCCTTGGGAAATCATACTGTGATAGAGGTGAGCATTTCCATGTTTTATAAAGGTATGCACTCAATACGTATGTCCACTTCTGTTTTATGTCAGACCTTCTTCCAAGTAGTAAGGACACAAGAAGTAACAGGACAAAGTCCTAACAGCAGGGAGCACACACACCTGATACCATTGAAGTAGTTTAGAAGCAGGAAACATACAAGAGCTGTACCATCCTACTGGGACAGGCGAGGCACTCCAGTCAGGTCCTTGTTCTGCTAACTAACAGAGTGCTGTAGAGTGCCTGTCTTCTTCATCTGTAATCCAGATTGCAGACAAGACCGTCCCTAGATCCTAATGAAGTGTATGTCTCTGCTTTTGCTAAGTGTCCTCTATCTATGACTGCTATAGTGCTGACCTGTGACAGACAAACATCCAGCTTACCTGGCATGTTAGACATAAAATGCCAATTCTTTCTTCCAG
Seq C2 exon
AGACATGTGACACAGTCTGGAGGTAACCGTAAGTTCAAGTGCACCGAGTGTGGGAAAGCGTTCAAGTACAAACACCATCTGAAGGAGCACTTACGGATCCACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017863:ENSRNOT00000024336:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.236
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=WD(100=83.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=27.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAGATGCATTTTCCCAGT
R:
TGTGGATCCGTAAGTGCTCCT
Band lengths:
304-2169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]