HsaINT0185320 @ hg38
Intron Retention
Gene
ENSG00000148516 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]
Coordinates
chr10:31510673-31514708:+
Coord C1 exon
chr10:31510673-31510875
Coord A exon
chr10:31510876-31514602
Coord C2 exon
chr10:31514603-31514708
Length
3727 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TACCAGTTCTTTTCTTACAGAGA
3' ss Score
7.31
Exon sequences
Seq C1 exon
GAACACCAGATGCATTTTCACAATTACTCACCTGTCCATATTGTGATAGAGGCTATAAACGCTTTACCTCTCTGAAAGAACACATTAAATATCGTCATGAAAAGAATGAAGATAACTTTAGTTGCTCCCTGTGCAGTTACACCTTTGCATACAGAACCCAACTTGAACGTCACATGACATCACATAAATCAGGAAGAGATCAA
Seq A exon
GTAAGTGCAATGACTGAGAGTTCACTAACTTTCCAGATTTTGACAACTCAGCCCTCAATGGAAGGCAAGGATTTTAATATATTTGAAAGTTAAAAGAATGTACTAAACAGTGCTATATCTGCAGCCTTATAAAAGTGAAAATGATTATTTATTTGAGTTATCTGGTCATTCCTGAGATTAAAAACCACATATGAACGTTACTTTAGAGGTAACTCAGTATTTTGTTCAGGTAAGACCCTTTCCATCTTGACTTAATTATTTTGCTTATGCCATAACAGTTAATTCTTCAAGTTTAGAAGATGTTAAATTGCATTCTATTAAAATGTTCAGTGTAGGAAAAATAAGTACTGACTATATAAACCACATTATACTAACCAAATTGACAAGAAAGTCAAATTAAAAAGTTTAAGTTTCTTTGAACCAGTTACTATTTATTCTCAGTATAAGCTACGTGGTTTTTTTCCCCCGTAGTAAAGGGAGTTGCCTCCTCTAAAAATCTAAAGTTTAGATTTTTTTATTCTGAAGACTCAATTTTTATATGGTTTATTCTACTTCTGTGTCACTGTGCCCCAGTTTTCAGAAGTATAAACCAAGACTGTTTTGTAACTATAAGTTACATTTAAATTGCTGGTTCTATATTTAGGATTAAAGTCAAAAAAGCTTTTATCAGTTGTTCCTCTTTTACAAGGTCCTCATAGTTATCAGCCATCAACAATGAAATTAATATTGCCTTAATTCTAACTTTAAAAATTAAATAAATTTTCAGCCACACAGGGTTTGTGAGGGTACATGTTGGGGTTAGGCCACATTTCCAGTTTCTTACATCAAAGAATGATGTATATCTACATACCTGAACTCTGCCCTATGGATGTACCTAATATGTGTCACATATCCCATAGAGAACAAGTTAGACCATTTGCTAAGGTGATGGCTAGGCCAAACAAACAACAAAAAAGAATTGTAACAGAAAAAGAATGACTGAGCAGAGTCAACCTATTTCCTTAGTACTTTGGCAACAGTACTCATGAAATAACAAGATAATAAGAAGAGGGTGGCAATCAGGGAGAATAGAACCAAGATTTTATAGGTTTATGGTCCATAAGCCCATGAAGGAGCACTTGAAACAGGTGAGAGCTCCAAGAGAAGGACGAAATTAATACAGAGAAGGGACGACTGAAGGCAAACTCCGTCTCCTTCCTAGTGCCCCTATTAATGAGTCTTATCAGAGAGACCAGCAGAAGAGTATGTTTTATACCTTAGCGCTGTGATGTGGCCACAGTGTAGACAAGGCTTGGGAAAGAGCCTACTCACGTGACATTCAGGAAGCAGACCCATCCTGCAGCTGCTGCCACCATATTCCCTCTACTCCAAGGGCCATCGTGAAAGGAGAGGACAGATTGAACTGGTGGCGAAAGCAGAAGATGCCATTATAAAAACAAACTCCAAAATCTTTGATGAGCATGAAAACCAATTCTATGATGATTTTTCCAGTGGGTGCAAATGTAGTAGGATTTACATATAAACCGTGGGTCAGACTAAGGTCAGGAAGGAGCTGTGATAAATATGGGGACCAGTAATGTGAGGAAATATAACTGGGAGGTCTTGGAAACAATTTAGTTTGCAAGGCAGCAAACTAAAAGGTAGAATGTATATTTTGCTGGCCCTTGAGAATCATACTGTGACTAACAAGCATTTTCAAGTCTTATTAACTTGTTTATTCAACAAACATTTGTGTTTCTTTTATATGTGAGGCCCTCTTCTGGGTGTTAAAGGCACAGTAGTCAAAAAGGAAGTCCCTGATATTAGGGACCATACATTAGTAGATTATATAAAACAGAAATAAAATAATACATACTGTGAAGAAAAATACAGCAGGATAAGAGGATAGAAAGTGATGAAAGCTGCTAGGTTTCACAGAGAAGGGAGACTTCTCTGAGAATGGGATATCTGAATACAGTGAAGGAGCCAGTCATGGAATATTGGAGAAGGGCATTCCAGTCAGAGGAAACAGTGAAACATAAGAAAGCCTTGAGGCCAGAACCTGCTGGGCACACACTGAGAACAGCAGAGGCCAGTGTGAAAGGGAGAAAGGTAAGGCCAGAGAGGTGTTGGGGGCTACATATTATAGGCCAAGATAAAGACGTTGGATTGTATTCTAAAGTGCAGTGGGGATGCCTGTCAAGGATCCAGGAATTTTTAATTTTTATTTTTAGGGGAACACTGACTGTTGGATGATAGATAAGAGAGACAAGAACGGAAGCAGGGAGATCATTTAGAGGCTTTTGCTGTAATCTAGGCCAGAGGTTTTGGTGGCAGACAGATAAATAAGATTGTTGGCTTCAGAATATGTTCATATGCTTGCTGATGGATTGGGTGAGGGTACATGAGTAAGAGGGTAATCAAGAATAACTCCAAAGTTTAAGGCCTAAGCTATAACCAAATAAATGATAGTGCTATTCACAGAGATAGGAAATACTAAAGACGGAGCTGGCTTGCAGGAGGGAAATTAAGAGTTTGGTGTTAATCATGTTAAGTTTCAGATCTCTATCACCTTCCAACTGGCAATATCAAATAAGCAGTTGGTTGTAAAAGTCTGGAGTTAAGGGGAGAGGTTTAGAGATACAAATGTGGGAGTCGCCACCATATATTTGGTATTTTAAGTCATGGGTTTTAGTGAAGTAGGACCTGATTCAGAGTAAGTACTAATTCTCTTTCCTTCCTGTATAAAAGGCAAAGGAAGGGAGATTCCAGCTGGAAGAGCATGAAGCAGTAGTTGAGTTAAGCCGTTAAAGGCTGGGTAGAATCTTAGTAGTCAAAATTATGGGAAAACACAGTGAAGGAGTAAGAAATTATGTAAACCAAAGCCAAAAGATAAAGAGGAGCAATATGTGTGCAGAAAACCATGGCTCGCTAAATGACTGAGGCATAGACTTGTCATAAAAAACTGGTGAAGAATCATCTTGGAAACTCAGGGACTATAATCTTGGAATCTGTAGACTTGGAATCTTTATTGAGGGGTTAATGGGGATCCTTCAGAAGTTTATGAGGAGGAGTTGATAGAATGCAATTCAAGCAGTGCTTTTGTAAGATTAATCTAAGTATGAAGAATACATTTGAAATATGTGAAAATGGGAATTTGATAAACCAGACAGAAAGCTATTATAATAATCCACATTTGGCTGAAAAAACTGGAAGTATTTTTTTAATCATCAGATTAAAGTACATTTTGGAAATATCAAATAGAAGAGACAGGATAAAGTACAGGAAAAATCCTGTCTTCTATTCAGGACCTTGTTCTGTTGAGTGAGCTTTAGACAGGTTATTCAGTATTTGTGGATGCGGTTTCTATATCTATAAATTGGAAAGCAAACAAGTTAACCTCTAGTTCCTAGCAAAGTATATATTACTTTATTTTTACTAATTTTGAATATTGTTTAATAAAGGATGAACTCTGATACTTTAGAAAGTTGGTATTTTTCTGTATCAAATTCTGTCCCCACTATCACTATCCTTTTTGGTAATAATTTCAGGAGTTACATTTTTGTGACTGCTACAACTGCTAATAATTTCAAGAGTTAGATTTTTGTGACTGCTGCAATTTGAGGTCTTTAAGAAACAAAACAAAACAACCATCAGGCTCACAAAAATGTCACTCTTAGTAGATTGGATGTTCTTTAGTCTAAAGATCTTTTGCTTTTCAAATAAAATACCAGTTCTTTTCTTACAG
Seq C2 exon
AGACATGTGACGCAGTCTGGGTGTAATCGTAAATTCAAATGCACTGAGTGTGGAAAAGCTTTCAAATACAAACATCACCTAAAAGAGCACTTAAGAATTCACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148516:ENST00000437844:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.093
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=WD(100=83.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=27.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains