GgaINT0093099 @ galGal4
Intron Retention
Gene
ENSGALG00000007260 | ZEB1
Description
zinc finger E-box-binding homeobox 1 [Source:RefSeq peptide;Acc:NP_990462]
Coordinates
chr2:14315679-14319627:-
Coord C1 exon
chr2:14319425-14319627
Coord A exon
chr2:14315785-14319424
Coord C2 exon
chr2:14315679-14315784
Length
3640 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTGCAAATTCTGTCTTGCAGAGA
3' ss Score
8.46
Exon sequences
Seq C1 exon
GAACGCCCGATGCATTTTCCCAGCTGCTCACTTGCCCGTACTGTGACAGAGGGTACAAACGCTTCACCTCTCTGAAGGAACACATTAAATACCGCCATGAAAAGAACGAGGATAACTTCAGTTGCTCCCTCTGCAGTTACACGTTTGCGTATAGAACACAGCTGGACCGCCACATGACGTCGCACAAGTCGGGACGAGATCAG
Seq A exon
GTCAGTGGCAGTTGGCTGCAGGCCCTGCTGTCCTCTACAGCAGCATCTGGTGTGTGAGCAGAGACCTACAGAGCATGCTGGACGTTTGTCTCAGAGCTTTGTGGGCTGAAGTGCCAATCCTGGAGCACTTCAACCTGCTGCTGAAGTCAGAGTTCTTCCGTAGCTAACAAAGGGTGTGATCTGAGTTGCTGTACTTCCTTCATCTAGGCAGTACGGTTGGGTCTGAATTTTAGTTTCAGAAGTGCAAAAGATATTCTGAGCTTGTTTTCTGTGGTTCTTTTGTTGACCTGAGGGCATGGTTCCTTAAAATGCCCATGAGGAGTTAACCACCCCATTATTGCTGAGGTGCCTGAGGTTCCCCTCTCCCTGCTTTTCTATTTTTCTTTTATCCCTAGGATTTCCCATCACCCAACCCCAATTACATGCTTTCATAGCTTACCAGAGGTGCTGAAGCTCAGTAAGCCCGGTGAAGCTCACCGAAACAGTCAGGAATTAGCCAAGAAAACAGATACAGATTTTTGACCACCAGGTTAGAGAGAGGCTTGGAAACTCTCCCTTCTGAGGGCAGACTACAAAGATTGATACTCATTGGAGCTGAAAGAGGAGGGAAACATTGCAGAAATACACAAAGCCAGAATAGTGAAGAGAATATATTTCTTACAGCTCCAAAACAACAGTATTTCGTTAAACTGAAAAGCTCTGACGTAAAATTAACCAAAAAAGGAGATGATCTTTTACATACTGCATATTAATTATTGTTCTTCAAATTATCACTAATTCAAAGGATTTATCAGGGTTAAAAGTGCACTGTCCTTCATCCCCAAGTGAATACTTTCAGGGAACATTACAAGAAGTATAGGCAGTCCTGTCCAAGGGTTCTGTTGTTCTGCAGGGCTTAGAATAACCTCACCAGCATGTTCTGGCACAGTGGCTCTGATTTATTCCCAACGAACAATTCATTTCTGCCTTGTGCTCTTACTGCCTTGGCTTCCACTTTAAAGGTGCTATCATCCCATATACAGCTGATATCAATGCCTATAAAATCTGTGCATGCTTTTTGTAAAATCTAGTTGTGTGAAAATTTCCACTTTTTCCAACTAGAAACCTAAAAGCAGAAGAAAAGAGTAGGTGGAAGGACTTCCCATTTTTGCTGCTAGTTGTAATGAAAAGAGAAAAAATGATCAGGTGAACAGCCAGCCTTAGAAGAATGGGTAGAAAGGGAAACTTAGATTGTATCGCTGAAGGAAAAGTTTCAGATATATTTTAATAAGCTTATACTTTTGAAGGCACATGGCTGCATGCGCCAAGCAGGAATGTTGTTTCTTTGAAGTATCTGGAACTCACTATTACACCAGCTTACCTGTAATTCTCTAGAGCCATACCCAGAGTCAAAACAATAACTGTTCAGATGCTTGGTAAAGTTGAAATGCTGATTTGTTTATGTTACTGTCATGAAGGTGTCATGTCTTCAGATTGCCTACCTTTTTATATACATGATTTCATCATTTCTGCAATGGAAAATTGAGTTTTATCTATGGTAAAGTGTAGACCTCTTGGCTGTGAGTCTTAAACAGCAACATCTTCAAAACTGTTTACTGTCTTTTCCTTGTTCATAAAGGACTTAACCTGAAAATAGATGGTTTGGATAACTTTAGGTTGGCTTATGCATGTGACAGTTCTGTATTTGTTCTGCAAAAGGAAGCAGTGAGCAAAGATAATTTGCAGTGTAGCAGAGGCCATGTGAGAGGTACACATAGGCTGTGCCTTCCTCTGAGAAGGTGCCAACCTGCCAGGCTTTGCTGCTGCTCTGCTTCTGGAGATATACTTACACAAATACATTTGCTGTATTGCCAATACAAGAAGGATGGAGGTGCTACCTAACCAAAAGCTCAAGGCAGCCTACAGCTGTAAGCAGGAAAACAGAAAAACTCATTAAAAATTTGGTAAGAGAAATGTGAGTTTCCATGCCTTGGAAGTAGAATGTTGAATTACTAAGACTGGGGCAGAAACTTATTTGACAGATTGCATCCATGCAGTAATTGTGAAGCATTAGGATGCAGCGCGGCATCCGCAGTGGCTGTTTGTGTGCTGAGAGCCTTTAACTTGCCGAATGTCGAGTCAAACAGCGGTAACTGATTCTCTACAGGCTTAAGAGAATCCTGACACAGCTCTGTGTACTCAGCGGAGTTGGATCAGAGAAGTGCAGCAAGTCAGTTGCAGTCTCCCAAAGCATCTCCTTCCCAGTGCTTAAACAGAGCCCCAAAGATGTGTGGACGCCATTGGATCCCAGCACAGGCCTGGCACTGCTGGGCGGCTCCTGGACATCCTCCTTACCACAGCTCACCCAGATGGCTGAGTGCAGCCTGAAAGCAGCTGCTGCTTTTTAAATAAGCAACTGCTTTGAATAGATAAAAACTCCAATTCCTCTATCTCATGTCATAAATAAACATATTTCCTGTTTACAAGAGTGGATAGCGATAGGACAAGGGGGAATGGTCTTAAATTGGGACGGGGGAGATTTAGGTTGGATATCAGGTGGAAGTTTTTCACACAGAGGGTGGTGACGCACTGGAACAGCCCAAGGAGGTTGTGGATGCTCCATCACTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGGTGGTTGACAACGCTGCACATAGCAGGGGGGTTGAAACTAGATCATCATTGTGGTCCTTTTCAACCCAGGCCATTCTATGTCAGTAAATAAGTAGCTCCAAGTTTTAATGTGTGAGCTATTTTTGTCATAAAAAGTGCACATTAATAGATTATAAAGTTTGTAATAAAATTATATCTTGCACGTATGTGTGTCACACATACCATGCACATTTACACATCTTTCTTCACTTCTGCTTCTTTGAAGCTAGTACGGTGATAATGCTAAATTAAATGTCATTGGATTAAAAGTTTAAAGTACTTGATAATAAGTGCTCTCAAAAGGTGAAATATGACAGAAATAATTACAGAGCTTCAGTGCAAACAGTGAAGAACTGTGATGTTGCATACTGAGGAACTCCATCCATACTGTTATTTACTGCAATTGAGGTTTTTATTTATTTTGAGAATTAATTTTGACTGATCACCTTTGCTGCCACTGAGCTGTCTTCTCTTGTGCAGTCTTGTGGCACTGTTATGTAAAGGAATCCCAGGCCAAGTACTGCAGGCACGTAAATGGAAAAGTCAAGTCAACTGATTAAACTTTAAACAGGCTTTTATACGCTTTAATGTTTCTGTCTTCCATGACATATTCTGTGATTGGTGGGCTTGGGCTTTTTTTGGTTTTTGCTTTCACACATTGAATCTGTGTATATGTTGGAACTTACTCACACAGTGGGTCAGAGCAAGCTTCACCTGAAGTCAGGAGAAGGAGTGAATACTTTTGATTCCCTTTCATTGTACCAGATTTATCCAGAAGATGCACATGTTTCGGTTTTAACCTGACTTCTAATTTGTTTCTTTTCCATGCATAACACATGCCAATTTCAGTCTCTTAAAATTGTGATTATTTTCAGTTTTGTATTACATTTTCTCTGTTACCGTGTGAAAATACAGGCTTTTTTCCCAGCATGCTGTTTGTTGCAATAATTGCAAATTCTGTCTTGCAG
Seq C2 exon
AGACATGTGACGCAGTCCAGTGGTAATCGAAAATTCAAGTGCACTGAATGTGGAAAAGCTTTCAAATATAAACATCATCTAAAGGAACACCTACGAATCCACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007260:ENSGALT00000011752:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=WD(100=83.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=27.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]