MmuINT0178365 @ mm9
Intron Retention
Gene
ENSMUSG00000024238 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:MGI Symbol;Acc:MGI:1344313]
Coordinates
chr18:5758963-5761431:+
Coord C1 exon
chr18:5758963-5759165
Coord A exon
chr18:5759166-5761325
Coord C2 exon
chr18:5761326-5761431
Length
2160 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
ATGCCAGTTCTTTCTTGCAGAGA
3' ss Score
7.73
Exon sequences
Seq C1 exon
GAACACCAGATGCATTTTCCCAGTTGCTCACCTGCCCGTATTGTGATAGAGGCTACAAGCGCTTTACCTCTTTGAAAGAACACATTAAGTACCGCCATGAGAAGAACGAGGACAACTTCAGCTGCTCCCTGTGCAGTTACACCTTTGCATACAGAACCCAGCTTGAACGTCATATGACATCACATAAGTCAGGAAGAGAGCAA
Seq A exon
GTAAGTGAAAGAAGCAGGAGGCTGCCACCTTCCCAGGCTGGGCGGGCACGGGGGTGGAGCCTCAGGGAGGATGGGCACCTGGTGACTCAGGGAAGCTTCCTGGTCTACAGTCTGACAGATAGGAGAGGATGGCTTGTGAGCTTTCTCTTTCTTGTAAGCCTTGCCATCCTAACGTAATTGTTTGCATAAACCATAACAAGTATCCCTCAGAGTCGCTCTGTGAGGCTCTGTGAGGCTCTTGGGTATATCTGTTAACATGGTCTGTGTGGGAAGATAAACAGCGGCTGTTAAACCACTGCCTTCAGCTCTAACAAAATTATGGGGAAGCTTTAATGTGTTTAATTTTCTAAAGGCAAAGAGTTCACTTAGCGTAAGCTGCTGTGCTTTATCTACAGTAGTAAGGGGAGCTGCCGCCTCTAAAGCTTTAAGTTTGAGATCTTTTAGGCTGAGGACTCAACTTTGATGCCTTATTTTAATTCTGTATCACCGTGCTCCTTCTGTAGAAGTATAAAGTGACTATTCTAACTGTAAATCACACCTAAAGTGTTGACTGTATATTTAATGTTAAAACTAGAGAAAGCACCCAAGGAACTAAAGGGATCTGCAACCCTATACGTGGAACAACAATATGAACTAAGCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAATGGAAAAAAATTAATGTTAAAATCAAAGGGACTTTCGTAATTCTCCTTTTTTATAATGACCTGGTAGGTCCGATACCAGCAAGCAAGCTAATAGGAATTTGACAGTGCCTTTACAAATCAAGTAACCATTTCCCAGGAGGCTGTGGCATAGGCCAGGCAGCTTCCAGCAGTGGCCAACTCCTTATGTCACAGGGTGAGGAACATACACTTGAATGTGTGAGGACTTTGTGTAGGTGCCTAATACAGGCCACTTATCCCATAAAGGGTGTTAGTGCCTTTGCTTAATTGATGGATACTCCTAGAAAACATCAAAAGAAAAAGAAGCAACAGTTGGCCTGTTTGCTCAGGACTTTTGACATCACTTACAAAATGCAAGAATAAGAGGTAACAGGGAATGTGGAATAAAGGGAGAGCCCAGGGCTTTCATCAGCAGTAACCCAATGGGGAAGTCTTAGGGACCATTGAGAGTGGGAGGCAAGCAGAAACAAAGGGAGAAGCTGGCCTGACAGGAGCTCCAGGGGACATAGGCTTGCAGTGACAGCACCATGGAACAGACTGCTTTAGAGTTTGTGCATCCACAGCATAATGAAGGCTGAGGGATAGAAATGTCCACATGACTTCTGAAAATAGGCCCACTCTACACCTGCTGCCTCCCTCCTGGCTCAGTTGTTGGGACCCTGCTAAAGAACAGACAGATGTCAAAGCTGAGGCAACACCATAAAAACAGACTCTTAAAATCCACAATGACCATGATGGCCACTTTTGTGATGATTTTTCTGGTGGATGTGAACTGGAAGGAGCTATGATAGGGTGGCGGTGTTATAAGGAAGGGGGGGTGAGAGGTCTTGGAAACCATTATGGAATGTTGGTCTTTCAGGCCTTTGGAAATCATCCTGTGCCAAGGGATGAGCATTTGAATGTCGTGCAAAGGTGTGCACTTGATCTGTATTTCCACTGCTGGTCTATGTCAGAAGGACACAAAAAGTAATAAGACAAAGGCCGAACAGCCGGAAGCACACACGGCTGATGCAACAGAAGTACAATTTAGAAACAGGAAATTTACACGAGCTATTCATCCTACTGGGGTGGGCCAGGCACTGAAGTCAGGTCCTTGTTCTGTAGAGGGCTTGCCTTCTTCATCTGTAATCCACAGCCATCCCTAGGTCCTCATAAAATGTACGTCTCTGCTTTTGCTAAGTGTCCTCTATTTATGACTGCTACAGTGTCAGGTATGTAACAGATCAACATTCAGTTCACCTGGAATGTCAGACATAAAATGCCAGTTCTTTCTTGCAG
Seq C2 exon
AGACATGTGACACAGTCTGGGGGAAACCGCAAGTTCAAGTGCACTGAATGCGGGAAGGCCTTCAAGTACAAACACCACCTGAAAGAGCACTTACGGATTCACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024238-Zeb1:NM_011546:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=68.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=27.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: