HsaINT0185320 @ hg19
Intron Retention
Gene
ENSG00000148516 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:11642]
Coordinates
chr10:31799601-31803636:+
Coord C1 exon
chr10:31799601-31799803
Coord A exon
chr10:31799804-31803530
Coord C2 exon
chr10:31803531-31803636
Length
3727 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TACCAGTTCTTTTCTTACAGAGA
3' ss Score
7.31
Exon sequences
Seq C1 exon
GAACACCAGATGCATTTTCACAATTACTCACCTGTCCATATTGTGATAGAGGCTATAAACGCTTTACCTCTCTGAAAGAACACATTAAATATCGTCATGAAAAGAATGAAGATAACTTTAGTTGCTCCCTGTGCAGTTACACCTTTGCATACAGAACCCAACTTGAACGTCACATGACATCACATAAATCAGGAAGAGATCAA
Seq A exon
GTAAGTGCAATGACTGAGAGTTCACTAACTTTCCAGATTTTGACAACTCAGCCCTCAATGGAAGGCAAGGATTTTAATATATTTGAAAGTTAAAAGAATGTACTAAACAGTGCTATATCTGCAGCCTTATAAAAGTGAAAATGATTATTTATTTGAGTTATCTGGTCATTCCTGAGATTAAAAACCACATATGAACGTTACTTTAGAGGTAACTCAGTATTTTGTTCAGGTAAGACCCTTTCCATCTTGACTTAATTATTTTGCTTATGCCATAACAGTTAATTCTTCAAGTTTAGAAGATGTTAAATTGCATTCTATTAAAATGTTCAGTGTAGGAAAAATAAGTACTGACTATATAAACCACATTATACTAACCAAATTGACAAGAAAGTCAAATTAAAAAGTTTAAGTTTCTTTGAACCAGTTACTATTTATTCTCAGTATAAGCTACGTGGTTTTTTTCCCCCGTAGTAAAGGGAGTTGCCTCCTCTAAAAATCTAAAGTTTAGATTTTTTTATTCTGAAGACTCAATTTTTATATGGTTTATTCTACTTCTGTGTCACTGTGCCCCAGTTTTCAGAAGTATAAACCAAGACTGTTTTGTAACTATAAGTTACATTTAAATTGCTGGTTCTATATTTAGGATTAAAGTCAAAAAAGCTTTTATCAGTTGTTCCTCTTTTACAAGGTCCTCATAGTTATCAGCCATCAACAATGAAATTAATATTGCCTTAATTCTAACTTTAAAAATTAAATAAATTTTCAGCCACACAGGGTTTGTGAGGGTACATGTTGGGGTTAGGCCACATTTCCAGTTTCTTACATCAAAGAATGATGTATATCTACATACCTGAACTCTGCCCTATGGATGTACCTAATATGTGTCACATATCCCATAGAGAACAAGTTAGACCATTTGCTAAGGTGATGGCTAGGCCAAACAAACAACAAAAAAGAATTGTAACAGAAAAAGAATGACTGAGCAGAGTCAACCTATTTCCTTAGTACTTTGGCAACAGTACTCATGAAATAACAAGATAATAAGAAGAGGGTGGCAATCAGGGAGAATAGAACCAAGATTTTATAGGTTTATGGTCCATAAGCCCATGAAGGAGCACTTGAAACAGGTGAGAGCTCCAAGAGAAGGACGAAATTAATACAGAGAAGGGACGACTGAAGGCAAACTCCGTCTCCTTCCTAGTGCCCCTATTAATGAGTCTTATCAGAGAGACCAGCAGAAGAGTATGTTTTATACCTTAGCGCTGTGATGTGGCCACAGTGTAGACAAGGCTTGGGAAAGAGCCTACTCACGTGACATTCAGGAAGCAGACCCATCCTGCAGCTGCTGCCACCATATTCCCTCTACTCCAAGGGCCATCGTGAAAGGAGAGGACAGATTGAACTGGTGGCGAAAGCAGAAGATGCCATTATAAAAACAAACTCCAAAATCTTTGATGAGCATGAAAACCAATTCTATGATGATTTTTCCAGTGGGTGCAAATGTAGTAGGATTTACATATAAACCGTGGGTCAGACTAAGGTCAGGAAGGAGCTGTGATAAATATGGGGACCAGTAATGTGAGGAAATATAACTGGGAGGTCTTGGAAACAATTTAGTTTGCAAGGCAGCAAACTAAAAGGTAGAATGTATATTTTGCTGGCCCTTGAGAATCATACTGTGACTAACAAGCATTTTCAAGTCTTATTAACTTGTTTATTCAACAAACATTTGTGTTTCTTTTATATGTGAGGCCCTCTTCTGGGTGTTAAAGGCACAGTAGTCAAAAAGGAAGTCCCTGATATTAGGGACCATACATTAGTAGATTATATAAAACAGAAATAAAATAATACATACTGTGAAGAAAAATACAGCAGGATAAGAGGATAGAAAGTGATGAAAGCTGCTAGGTTTCACAGAGAAGGGAGACTTCTCTGAGAATGGGATATCTGAATACAGTGAAGGAGCCAGTCATGGAATATTGGAGAAGGGCATTCCAGTCAGAGGAAACAGTGAAACATAAGAAAGCCTTGAGGCCAGAACCTGCTGGGCACACACTGAGAACAGCAGAGGCCAGTGTGAAAGGGAGAAAGGTAAGGCCAGAGAGGTGTTGGGGGCTACATATTATAGGCCAAGATAAAGACGTTGGATTGTATTCTAAAGTGCAGTGGGGATGCCTGTCAAGGATCCAGGAATTTTTAATTTTTATTTTTAGGGGAACACTGACTGTTGGATGATAGATAAGAGAGACAAGAACGGAAGCAGGGAGATCATTTAGAGGCTTTTGCTGTAATCTAGGCCAGAGGTTTTGGTGGCAGACAGATAAATAAGATTGTTGGCTTCAGAATATGTTCATATGCTTGCTGATGGATTGGGTGAGGGTACATGAGTAAGAGGGTAATCAAGAATAACTCCAAAGTTTAAGGCCTAAGCTATAACCAAATAAATGATAGTGCTATTCACAGAGATAGGAAATACTAAAGACGGAGCTGGCTTGCAGGAGGGAAATTAAGAGTTTGGTGTTAATCATGTTAAGTTTCAGATCTCTATCACCTTCCAACTGGCAATATCAAATAAGCAGTTGGTTGTAAAAGTCTGGAGTTAAGGGGAGAGGTTTAGAGATACAAATGTGGGAGTCGCCACCATATATTTGGTATTTTAAGTCATGGGTTTTAGTGAAGTAGGACCTGATTCAGAGTAAGTACTAATTCTCTTTCCTTCCTGTATAAAAGGCAAAGGAAGGGAGATTCCAGCTGGAAGAGCATGAAGCAGTAGTTGAGTTAAGCCGTTAAAGGCTGGGTAGAATCTTAGTAGTCAAAATTATGGGAAAACACAGTGAAGGAGTAAGAAATTATGTAAACCAAAGCCAAAAGATAAAGAGGAGCAATATGTGTGCAGAAAACCATGGCTCGCTAAATGACTGAGGCATAGACTTGTCATAAAAAACTGGTGAAGAATCATCTTGGAAACTCAGGGACTATAATCTTGGAATCTGTAGACTTGGAATCTTTATTGAGGGGTTAATGGGGATCCTTCAGAAGTTTATGAGGAGGAGTTGATAGAATGCAATTCAAGCAGTGCTTTTGTAAGATTAATCTAAGTATGAAGAATACATTTGAAATATGTGAAAATGGGAATTTGATAAACCAGACAGAAAGCTATTATAATAATCCACATTTGGCTGAAAAAACTGGAAGTATTTTTTTAATCATCAGATTAAAGTACATTTTGGAAATATCAAATAGAAGAGACAGGATAAAGTACAGGAAAAATCCTGTCTTCTATTCAGGACCTTGTTCTGTTGAGTGAGCTTTAGACAGGTTATTCAGTATTTGTGGATGCGGTTTCTATATCTATAAATTGGAAAGCAAACAAGTTAACCTCTAGTTCCTAGCAAAGTATATATTACTTTATTTTTACTAATTTTGAATATTGTTTAATAAAGGATGAACTCTGATACTTTAGAAAGTTGGTATTTTTCTGTATCAAATTCTGTCCCCACTATCACTATCCTTTTTGGTAATAATTTCAGGAGTTACATTTTTGTGACTGCTACAACTGCTAATAATTTCAAGAGTTAGATTTTTGTGACTGCTGCAATTTGAGGTCTTTAAGAAACAAAACAAAACAACCATCAGGCTCACAAAAATGTCACTCTTAGTAGATTGGATGTTCTTTAGTCTAAAGATCTTTTGCTTTTCAAATAAAATACCAGTTCTTTTCTTACAG
Seq C2 exon
AGACATGTGACGCAGTCTGGGTGTAATCGTAAATTCAAATGCACTGAGTGTGGAAAAGCTTTCAAATACAAACATCACCTAAAAGAGCACTTAAGAATTCACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148516-ZEB1:NM_030751:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=WD(100=83.8)
A:
NA
C2:
PF061076=DUF951=PD(75.0=85.7),PF0009621=zf-C2H2=WD(100=82.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000319248, ENSP00000391612, ENSP00000405958, ENSP00000415961, ENSP00000444282, ENSP00000444891, ENSP00000452612, ENSP00000452703, ENSP00000452784, ENSP00000452787, ENSP00000452868, ENSP00000453258, ENSP00000453559, ENSP00000453568, ENSP00000453674, ENSP00000453823, ENSP00000453874, ENSP00000453970
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)