RnoINT0167562 @ rn6
Intron Retention
Gene
ENSRNOG00000017863 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:RGD Symbol;Acc:3831]
Coordinates
chr17:54670652-54673744:-
Coord C1 exon
chr17:54673583-54673744
Coord A exon
chr17:54670855-54673582
Coord C2 exon
chr17:54670652-54670854
Length
2728 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
AGCATCTCTTCCCTCCACAGGAA
3' ss Score
11.28
Exon sequences
Seq C1 exon
TAAAAGATGACGAATGCGACTCAGATGCAGAAAACGAGCAAAACCATGATCCCAACGTGGAAGAGTTCCTGCAGCAACAGGACACCGCGGTCATCTACCCTGAGGCACCCGAGGAGGACCAGCGGCAGGGCACGCCAGAAGCCAGCGGTCATGATGACAATG
Seq A exon
GTGAGTGCACGGCCCTCGCTCTCAGGGCCAAGGGTCGCTGTCTCCATTGCTCTATTGTGGGAGCGTATGTCTACTTAAGAGAAGCAGACTCTTGTGGGTGCTCACGGTGAGAATCAGTCAGCATGGAGTTGTTGGCTGCTCAGATAGAGCGACAAGCCAGGCGAATCCAGGGCCTGGGCCACCTTCCACTGAGACAGCAGCAGCTGGCAGAAGTGAGGACGAGTCTGGCCCGTTCTGTCCTTTGGTTGTTTTTGTTTGTTCATTGTTATTGTTTTACAAGTTAAAGATGGTGGGCCGCTGAGAACACACAAACATGGGCACCGTTGTTTCTCGGCATCTGCTTTAGTCCAGGAGGAATTCCCAGTGAGTAGAGAAAGGGAAAACCCAATCAGTATGTTCAGACCTCCTAAGCAGAAGTCGGCTGCCAGCCCCTCCCAAGAACTGTAATCAAATGTAGATCACATGTAATCGTCCTTCAAGTAATTTCTTGTCATATTGTACTGAGACTAGGAAGGTACTTGAAATTTTCAAGAGTTCGTGGAGTTTTAATTTCTTAAACTCGACTTTAATTTTCCAGGATTCTCAGTTGAGTGGATAGATTGAGCTTTTTGGAACTTTTTGGAGGAAATTGAGGAAGGGTGGTATGAAAAGAGAAAATAGAGTACTGATCTAAGTCAGGTAGACTCCTAAGTATAAGCAGAAATATTTAGAAAGCAGCCTGAAGTCTGACCATTTAGCAAAACAGTGTAACAGGTTCCCACCGAGCATCTAGGACCTCCAGCCATAGGCTTTTCACTACAGTAACAGAATTAGACGTGAATTAAACATGAACAGGCCTAAAACACCATTGGTCATCCCCAAGGCAGCCAGGCCACCGTCTCTCAGCTGGACATCCTTCCTGGCAGGCCGGCAACCTAACATGGACGTTCTACTGGGGTTAGTTGGTTGACAGCTTTCCTTCCCTCATGACCTACATAATACCTTGCAGTACTATGAAAGCTAGCCAGTAGGAAGTTTCCCGGTTAGTTTGAGATTCATTTCTCTATGTCCTGAAACAAAAGTGCATAGAGTCTTCAGGATTAGTGTCCTACCATCTAGTTCTGATATACGGCCAAGAGTAATGCCATAGCCTGTGTTCCATGGTCTTCCTGGCCAGCAGTGCACTAGCACCAAGCTCTATGTTTCATCTAATACACGTGCCTTCTGAGGGAACATTGTCTACCTGGGCACGCTACTGTCATTCCGAGTTCTTTTTTATAATTATGTTTTTATAAGGCTTTTTCATACATCCGAGGTTTTGATTAATCCACCCCAGCTCCTTATTCTGTGATTCTGAAAGCAAATTCATTTACTTTTTATTGGTTTTTGCTAGTGACCTAAAAGGATAAATTCATACCTCGTGTTTAAGAAAATTCAATGTACTGATTTATGAAAATAACTTTCTGTTTGATATCATGACCAACCTGTCATCTTCCCAGCTCATTAACAGTTTGCTTCCTGGAGTAAGAGTAGTTTGGCTAATGGAGCCACAGGGTTTGGCCATGCCATTGCACAGCCAGAACAGGCCTTGCCTCTTGGCATTGTAGCCACATAAACTCAGTAAGGCATGATGGGCATTCTGGCAAGGGAAAAGTTCAAAATGCTGGTTTCCCACCATCCTGTGCAAAACATAACATAGATCTCCAAAAGAAGAAAGTCTGTGTTAAGATGACCCTAGCCGGGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCTTAGCAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAAAGAAAAAAAAAAAAAAGATGACCCCTAGCCAAACACTGTGTCAAGTGTACCTGCATGGGAGTAGCTAACGATGCTGTGATGAAATGTGGAGTGCTAGCTATTTGATTTCTCTCACAGATTTGCACATTTTCAACATGCTTGTCTAGGCATTTAAAGTTCAGGTTTTCAATCCCTCATCTGCAGGCTGGTCTTTAAGTGAGATGTTTAGTTCATATGGCCTGAACTCCAGGACAGCGCTGTGTACTTATGATGAAGTACCTGAAGTGTTACCAAAGTGCCGTAGGTGGCCTATCTTCTAAGAATTTAAAGAAAGGAGAGAGTATATTTACAGGAAAATATCACTTATGAACGAATTTATTTGAAAACTAAATGTGGAAAACTGCTCACAGTACAAACTGGCAAAGTATTCCTACTTAGAATTCTCAGTCATGCTGTTCCCACCACTTCCATATAGGGTGTGAATCAGCCATGTGGGCACGCCTGCCTCCAGGGCACTTCAGAAACTACACTGCTCACTGTGGCGGCAACTTCAGTGAGAAGAGCGAGTGCCAGGCAAGCTATGAAATTGTCACAGTTGTGCAGCTGTGTGGCCCCCATACAGGCTGTGGCTTATCACTGTCACTCGGTCCTAAGTGACTTGAGTTCCCCAGCTAACCACCCAAAAGAAGGGGAGAGCTGCGCTTCAGAGATGGAAGGGTTAGAGCCATGATCGGATGCCAAATTAAGCATTTGCTGCGTGACTTATAAGCTACTTAACCTGGATTTATTATCCCACTTTCTCATGCATACATGGAGGTGACATCCACCCTTCATCTTCGGAGGCAGTTGTAAGAGAGCAGCACTGCTGTTGTGTGTGGCCCAGGGATTCAGTGATGAATGGCCATCGTCCTTGGCTGCTTTCAGTAACAGCATCTCTTCCCTCCACAG
Seq C2 exon
GAACACCAGATGCATTTTCCCAGTTGCTCACCTGCCCGTATTGTGATAGAGGCTACAAGCGCTTTACCTCTTTGAAAGAACACATTAAGTACCGCCATGAGAAGAATGAAGACAACTTCAGCTGCTCCCTGTGCAGTTACACCTTTGCATACAGAACCCAGCTTGAACGTCATATGACATCACATAAGTCAGGAAGAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017863:ENSRNOT00000024336:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.255
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF056057=zf-Di19=WD(100=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]