GgaINT0093098 @ galGal3
Intron Retention
Gene
ENSGALG00000007260 | F1NB51_CHICK
Description
NA
Coordinates
chr2:14308510-14312083:-
Coord C1 exon
chr2:14311922-14312083
Coord A exon
chr2:14308713-14311921
Coord C2 exon
chr2:14308510-14308712
Length
3209 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
ATGTTGTGTCTCCTGTGCAGGAA
3' ss Score
10.6
Exon sequences
Seq C1 exon
TAAAAGAAGATGAATGTGATTCTGATGCAGAAAATGAACAGAACCATGACCCTAATGTTGAAGAATTCCTTCAACAAGAAGATACAGCTGTTATTTACCCTGAAGCACCTGAGGAGGACCAGAGACAAGGCACACCAGAAGCTAGTGGTCAGGATGAAAATG
Seq A exon
GTAAATATGCCACCAGTTAAATAATACAAAATAAATTATGTTGAGCACATGAGCCCAGAGTTCTGTTGTGCTTTGAAAGACAACAACACATGATACTTGATTTTGTGAAGCAAGACATGCACTGGGAGTCAGTTGTATGGGTACCTAAATGGTAGTTGGAAGTAAAATCAATCTTTGGTAAATACATAGGGGTTATTTTCCCAAAAAGACAATGACAGAGAAAATTGAAATATTACTTACACAAAAATATTCATATGATTCTTAATGGAAGCCCACTGAGAAATACTGCCTTTCCAGTAGACTTTGAGAATATTAAAGGTACTGGAATAAGAAAGTTTTTATTCGATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATAAGAAAGTTTTTATTCGATTATGACTTGTTTTTGTTCTTAGTTAATTCTCTGTGAAACACTGAGTTGAAAATAACACCCTACCTAAATGGTTTGGAGATGTTCTGATCCAGCTGTTTATTAAAAAAGTCCATATTTGAACAAAAGGTGTCATTGTGGCTGTATTAGTTTACTGGAGTCTAAGGGAGAGCACTGAAAGGGGTGCTGCTGACATATTTGTCCCGCTCTCTCAGAGGTCTTCTGTTATTAGACATTTTAGTAATAAAAAAGAATATATTTAAGAAATGTGAACTGAGTACCTGCCTATATATTTCATAAATAGGACATGAGTTTCCAAGATTTTGTGATTTACTTCACGTTTAGTAAAATTCAATTAAGATATATTCTGAACAGTAGCATTTTGAAGTTTTTTAAAATTTTAATCTGTAGTTGCAGTGGCACAGCTTGTCACGTTAGTTTTACAGACTTGCAATGATTTCCATGTAATCATTAAAAATACACTTTAGCATTAATAATTGAAATTGTACCTGACTCTGTAGGTTCAGATGGAAGTGCTCTGAAAGTCACAATGCTGAACAATGATGCTCAGTGTTTGAATTATTTGGAAGAGAAAATGCCAGAAATGTAGTGATATTTGGTAAAGATGGATTCCTCCAAAGCAGGGGAGGGACAAGTGAGGTGACAGAGCATCGGAGTATTTAGCACTGGGCTTTGTGAAACCTCTGCCATTTCAGCATTTGCTCCAATGGAAACAGAATTTAGGTTGTGCTTGTGACATTTCCACTGACTTGTATTTGTGCTGAAATCTGTGTCCTTGTGCTGAAATTTGTGTCGTATGAATTGAATTGTAGATGTAAAAGATGAACAGAATGGGAGCATGCTGTATCCACACATGAGCATGTGTTCATTTTACTTAGTCATGGAGAAACAGAAACTGAAATGGTTAGAACAGCCCAAAAACAGTGAAGTATTAGTGTTATCAGCTTGTTCCCATAAGAAGGGGAAAAGATCCCGTGTGACAGAAAAGTTCTTATTTCTATGTGATAAAGAAAACTGGTCTGACTCTTCACTGTTGCGAAAGCAATGGCACGTTCAGTGAAAATGGCAGGAAATCCCACACAAATAGGGATTGCTACTGTATTGCTGAGCCCATACGCAATCTGTGGCAATAACTGCTGGAAGATGTCATGAAGATAAGTAATTCAGAAGTACTTCAGGAACTACCGGTTAATTTTATCAGTATTAATAATTGCTGATAGTTCAGCGACATCAAATGACAATCTGTACCCCAGTTTGCACCTCACGATTCAAATCATAAAGTAATAATCTGTTCAGATGTTCCACTTTCCTCTCATACTGTCACTGAGTCCAATGGATAGATGCTTTGATGCAAAATCTGCTTTCCATTTCCCTTGAATCGTGGTCATTGAACGTTACCAGACCTTGTAAACAGGTAGTGTGATCCAGTACTGCGAACCCTGCATTTCTGGAAGCACTTTTTCCATTAATCTGTAAAGTAAGATGTTTTTTCAATCTCAGAAAAAAATCTTTTCTAGCATAGAATAAGTTACTATATGTGGGGGATAACAAAATGCTGATAAGAAAAAATGGAGTTAAAGCTTCATAAATGATGACTTCTCAGAAATATTCCTGTCAAATTAATATCCAGCTTCAATCTGATTTCACTTTTTGCTGGTACAGAAATAACTTCACAGAAGCCAATAGAATAAATCCCATAGATTGTATTAGAATCGTATTTATGGCATCACATTGGATATCTCTTCTTTCTGTCTCTCATCTGCTTCTCCTGCATATAGTATGTCCTACATAGTTAAGCATAACTATAAAGAATATCAGCTGTGTTTCTGTTCTCCTTTCTCTTACAATTTTGTGTTAAGAGACAAGAAAATCATTCTCTGCAACCTAAAAATATTGCTCATTCCTCAGGATCTGGAAATAGGGTGACCATTAAGTGTCGCAGTGCTAGACTTGTTTTGTGAACGTGATTTCAGGGTTGCTAGTGTTAGGGCTAACCAGGCCTACAGAGATTGCTAGGTCTAAAACCATGTGTTACAGTGGTCAGAGTACTTTCTCATCAGAGACACGTGCAGAGGCTCTGGTGCTGTGTGGGGACAGAGGTGTGGTTCTGGGGAATGTCACTGCTGACATCCTGCAGCACACGCTGGGACAGCTGCACCCTACCGCAGTCAGTAACATAATACCCAAAGAAAGAGTACGAACAGTCATTGTTCCTTTTCTAAACCAGATGGAGCTTTCCAGCAGCTGCACGTTTTCTTACAGCCATATGTATGAATGTAGACCGTGTCTGTCAGTGTTGGTTGAGTTCAGAGTTTACATCTCATTTCAATACACCATGTTGTGTCTCCTGTGCAG
Seq C2 exon
GAACGCCCGATGCATTTTCCCAGCTGCTCACTTGCCCGTACTGTGACAGAGGGTACAAACGCTTCACCTCTCTGAAGGAACACATTAAATACCGCCATGAAAAGAACGAGGATAACTTCAGTTGCTCCCTCTGCAGTTACACGTTTGCGTATAGAACACAGCTGGACCGCCACATGACGTCGCACAAGTCGGGACGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007260:ENSGALT00000011752:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF056057=zf-Di19=WD(100=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]