MmuINT0178364 @ mm9
Intron Retention
Gene
ENSMUSG00000024238 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:MGI Symbol;Acc:MGI:1344313]
Coordinates
chr18:5748692-5759165:+
Coord C1 exon
chr18:5748692-5748853
Coord A exon
chr18:5748854-5758962
Coord C2 exon
chr18:5758963-5759165
Length
10109 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
AGTATCTCTTCCTTCCACAGGAA
3' ss Score
10.84
Exon sequences
Seq C1 exon
TGAAAGACAACGAGTGTGACTCAGATGCAGAAAATGAGCAAAACCATGATCCGAATGTGGAAGAATTTCTGCAGCAACAAGACACCGCCGTCATTTATCCTGAGGCGCCCGAGGAAGACCAGCGGCAGGGCACACCAGAAGCCAGCAGTCATGATGAAAACG
Seq A exon
GTGAGTACAGCTTAGCACGTGATCCTCGTTCTCAGGGTAAAGAAAGGGTTGCTGTTTCTATTCCTCTATTATGGGAGCATATTTCTACTAAAGGGAGCACTTAAGAGAAGCAGATTCTTGTGGGCACTCATGAGGAGAATCAGTACAGCATGGAGTTGATGGCTATTCACAGACAGAGTGACAAGCCAGGCGTGTCTCCAGTGCTTCGGTTACCTTCCACTGAGATGACAGCTGCTGTCAGAAGTGAGGAGTTTGGCCCATTCTGTTTTTTGATTGTCTTGGTTTGTTTATTGTTATTGCTTTAGCAAGTAAAAGATGGTAGGCTTGGCTGAAAGCACACAAACTTGGGCACAGTTGATTCTCTGGATCTGCTTTAGTCCAGGATGAATTCCCCATGAGTAAAGAAAGGGAAAACACAATCAAAATATGTCCAGAACTCCTAAACAGAAGTCAGCTGCCAAAGTCTCCTCCCAAGAACAGGAATCAAATGCAGATCACATGTAAATGTCCCTGTGAGTCATCACATGTAAATCACATGTAAATGTCCCTGTGAGTAATTTCTCTTCATATTGTACTGAGACTAGGAAGAGACTTGAAAATTTCAAGGATTTGAAGAGTTTTAACTTCTTAACTTTGTCTTTAATTTTCCAGGGTTCTTGGTTGAGTGGATAGATTGAGCTTAATGTTCAAAACAATCAGCTTTGGACTTTTTGGAGGAAATTGAGAAAAGATGGTATGAGTAAAGAAAAGAGAACTGAGATGTAAATCAGTTGGTAGACTCCTAAGTATAAGCAGAAATACTTAGAAGGCAGCTTGACAGCATAACCATTTACCAAGACAGTGGTAACAGGTTCCGACCTAGGACCTCCACAACCATGAGCTTTGAACCTCATTAACATAATTAGACATGAATTAGACATGAACAGGCCTCAAAAAGCTTTACTTATCCCCAGAGCAGCCATGCCACCATCTCTCAGCTGGCGCATCCTTCCTGGCAGGTCAGTACTCTAGCATGTAGGTTCTACAGTGATAAGTTGATTGACAGCTTTCCCTACCTTCCAGTATATGAAAGCTAGCCAGCAGGAAGTTTCCCAGTTACTTTGAGATTAATTTCTCTATGTCCTGAAGCAAAAGTGTATGGTGTCTTCAGGATTAGGGTCTTACCATCGAGTTCTGATGCTCAGCCAAGAGTAATGCAGCAGCCTGTGTTCTGGGGAGCTCCAGAGGTCTTCCCAACCAACAGTGCATCAGCACCAAGCACTGTGGCTCATTTAATGTGCATGCCTTCTGAGGGAGCATTGTCCCCCAGGGCATACTACTTTCATCCAGAGTCCTTTTTTAAATTATAATTTTATTAATTAGTAAGGCTTTTCATACATCTGTGGTTTTAATTAATTCACCCCAGCTCCTCATTCTATGATTCTGAAAACAAATTTACATTTACTTTTTATTGGTTTTTTGCTAGTGACCTAAAAGAATAAATTCATACCTCATGTTTAAGAGAATCCAGTGTACTGATTTATGAAAATAAATCTGTCCAGATATCATGACCAATCTGTATTTTTCCCAACTCATGCTTCCTGGTTGCAAGACAAATCATGAAAACAAGCCATAGGAAGCAGTGAGCACACATAGCTCTCTGGCTCTGAAGTAAGAGCAGTTTGGTTAATGGAGCCACAGGATATGGCCGTGCCAGTCAGGGCACAGCCAGAGCAGACCTTGCTTCTTGGCATTCAAGCCACATGAACTCCCTAAGACATGATGGGCATGCTGACAAGGGAGACGTTCAAAATGCTGGCTTCCCACCATCCTGTACAAAATATAACATATATGTCCGAAACTGATCCCTAACCAAACTCTCTATATCAAGTGTACTTGCAAGCTAGTAGCTAAAGATGCCATAATGAAATCTGGAGCTCTGGCTATTTAATTCCACTCACAGATTTTCAAATATTTCAACATGCTTGACTAGTCATTTAAAGTTCGGGTTTTCAATCCCTCCTCTGCAGACTGGTCTTTAAAGAGAGATGTTTAGTCCATGTGGACTTGAAATCCAGGACAACACTGCATGCTTATGATGAAGCATCTGAAGTGTTACCAAAGTACTTTAGGTCATCTATTTTCTAAGAGTTGAAAGAAAGTAGAGAGTATAGCTACAGTAAAATATCACTTATGAACTAATTTATTTGAAAAATAAAGGCCTAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCTGGAACAGGCGGAAGCACAGAGGCACTGAGGCAGCACCCTTTGTGGGCCGGGGACAGCCAGCCACCGTCTGGACCGGAGGACAGGTGCCCGCCCGGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCCTCTGGAACAGGCAGAAGCACAGAGGGGCTGAGGCAGCACCCTGTGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAGGACAGGTGCCCGCCCGGCTGGGGAGGCGACCTAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCTGGAACAGGCGGAAGCACAGAGGCGCTGAGGCAGCACCCTTTGTGGGCCGGGGACAGCCAGCCACCGTCCGGACCGGAGGACAGGTGCCCGCCCGGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCAGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCTGGAACAGGCAGAAGCACAGAGGCGCTGAGGCAGCACCCTGTGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAGGACAGGTGCCCGCCCGGCTGGGGAGGCGACCTAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCTGGAACAGGCGGAAGCACAGAGGCGCTGAGGCAGCACCCTTTGTGGGCCGGGGACAGCCAGCCACCGTCCGGACCGGAGGACAGGTGCCCGCCCGGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCGAGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCTGGAACAGGCAGAAGCACAGAGGCGCTGAGGCAGCACCCTGTGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAGGACAGGTGCCCACCCGGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCCGGGACTCCAAGGAACTTAGGAATTTAGTCTGCTTAGGTGAGAGTCTGTACCACCTGGGAACTGCCAAAGCAACACACTGTCTGAGAAAGGTCCTGTTTTGGGCCTTCTTCTTCGGCCAGGAGGAGGTCCAAATACAAGATATCTGCGCACCTTCCCTGTAAGAGAGCTTGCCAGCAGAGAGTGCTCTGAGCACTGAAACTCAGAGGAGAGAATCTGTCTCCCAGGTCTGCTGATAGACGGTAACAGAATCACCAGAAGAACAATCTCTAAACAGAGTCAACTATAACTACTAACTCCAGAGATTACCAGATGGCGAAAGGTAAACGGAGGAATCTTACTAACAGGAACCAAGACCACTCACCATCACCAGAACCCAGCACACCCACTTCGCCCAGTCCAGGGAACCCCAACACACCTGAGAACCTAGACCTAGATTTAAAAGCATATCTCATGATGATGGTAGAGGACATCAAGAAGGACTTTAATAAATCACTTAAAGAAATACAGGAGAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAATCAAACAGGTAGAAGTCCTTACAGAAAAAGAGGAAAAAACATACAAACAGGTGATGGAAATGAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACTCAAAGCGAGGCAACACTAGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATTTGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCAAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATTCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGGGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGCCACAAATAATATAAAATATCTCGGCGTGACTCTAACGAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCCCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGACCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATTAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCCTTAAAAAATGGGGCTCAGAACTGAACAAAGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTGAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGAAGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAACTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGAGCATCATCCTGAGTGAGGTAACACAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATACTAGCCCAAAACCTAGGATACCCACGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCATGGAAGGAGTTACAGAAACAAAGTATGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCTTCCAAATGCTGACACCATTGCATACACTAGCAAGATTTTACTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTTCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCTGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAGACTTTGTGTGCCCCGGTACAGGGGAACGCCAGGGCCAAAGGGGGGGAGTGGGTGGGTAGGGGAATGGGGGTGGGTGGGTAAGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATTAAAAAAAAAAATAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAATAAATAAAATGTGGGAAACTTCTCAGAGTAGTGGAAAGTGGCGAAGTATTCCTATTTAGGATTCTCAGTCATGCTGTTCCCTGAGCGCACCGCCCCCTTTGTGGTGTGAACTCAGGCATGTGGCCACACCTGACACGGGGCACTTGGAAACTACTTACTGTGGCAGCAGTGAGAAGAGTGAGTGCCAAGCAAGCTCTGGAGTTGTCACAGCTGTGCAGGTGTGTGGCCAATACAGGCTGTGCTCTTGTCTCTGTAACTCAATCCTAAGTTACGTGCATTCTCCACCTAACTTCACAAAAGAAGGGAAGAATTATGGGTCAGAGATGGGAGAATTAGAGCCATGACTGGATGCCGAATTAATAATTTGCTTGCTGTGTAACGTTTAACCTACTTAGCCTGTATTTGTTGTCACATTTTCTCATGCATACCTGGAGGTGTCATCCACCCTTCATCTTTGGAGGCAGGTATAAAGAGAGGAGCACTGCTGTTGCATGTGGCCCAGGGATTCCGTGGTAAGTGACCATATTCCTTGGATGCTTTCAGTAACAGTATCTCTTCCTTCCACAG
Seq C2 exon
GAACACCAGATGCATTTTCCCAGTTGCTCACCTGCCCGTATTGTGATAGAGGCTACAAGCGCTTTACCTCTTTGAAAGAACACATTAAGTACCGCCATGAGAAGAACGAGGACAACTTCAGCTGCTCCCTGTGCAGTTACACCTTTGCATACAGAACCCAGCTTGAACGTCATATGACATCACATAAGTCAGGAAGAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024238-Zeb1:NM_011546:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.232
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: