GgaINT0093098 @ galGal4
Intron Retention
Gene
ENSGALG00000007260 | ZEB1
Description
zinc finger E-box-binding homeobox 1 [Source:RefSeq peptide;Acc:NP_990462]
Coordinates
chr2:14319425-14322507:-
Coord C1 exon
chr2:14322346-14322507
Coord A exon
chr2:14319628-14322345
Coord C2 exon
chr2:14319425-14319627
Length
2718 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
ATGTTGTGTCTCCTGTGCAGGAA
3' ss Score
10.6
Exon sequences
Seq C1 exon
TAAAAGAAGATGAATGTGATTCTGATGCAGAAAATGAACAGAACCATGACCCTAATGTTGAAGAATTCCTTCAACAAGAAGATACAGCTGTTATTTACCCTGAAGCACCTGAGGAGGACCAGAGACAAGGCACACCAGAAGCTAGTGGTCAGGATGAAAATG
Seq A exon
GTAAATATGCCACCAGTTAGTTCGTACAAAATAAATTATGTTAAGCACTTGAGCCCAGAGTTCTGTTGTGCTTTGAAAGACAACAACACATGATACTTGATTTTGTGAAGCAAGACATGCACTGGGAGTCAGTTGTATGGGTACCTAAATGGTAGTTGGAAGTAAATCAATCTCTGGTAAATACATAGGGGTTATTTCCCAAAAGACAATGACAGAGAAAATTGAAATATTACTTACACAAAAATATTCATATGATTCTTAATGGAAGCCCACTGAGAAATACTGCCTTTCCAGTAGACTTTGAAAATATTGTTTCATACTGGAATAAGAAAGTTTTTATTCGATTATGACTTGTTTTTGTTCTTAGTTAATTCTCTGTGAAACACTGAGTTGAAAATAACACCCTACCTAAATGGTTTGGAGATGTTCTGATCCAGCTGTTTATTAAAAAAGTCCATATTTGAACAAAAGGTGTCATTGTGGCTGTATTAGTTTACTGGAGTCTAAGGGAGAGCACTGAAAGGGGTGCTGCTGACATATTTGTCCCGCTCTCTCAGAGGTCTTCTGTTATTAGACATTTTAGTAATAAAAAAGAATATATTTAAGAAATGTGAACTGAGTACCTGCCTATATATTTCATAAATAGGACATGAGTTTCCAAGATTTTGTGATTTACTTCACGTTTAGTAAAATTCAATTAAGATATATTCTGAACAGTAGCATTTTGAAGTTTTTTAAAATTTTAATCTGTAGTTGCAGTGGCACAGCTTGTCACGTTAGTTTTACAGACTTGCAATGATTTCCATGTAATCATTAAAAATACACTTTAGCATTAATAATTGAAATTGTACCTGACTCTGTAGGTTCAGATGGAAGTGCTCTGAAAGTCACAATGCTGAACAATGATGCTCAGTGTTTGAATTATTTGGAAGAGAAAATGCCAGAAATGTAGTGATATTTGGTAAAGATGGATTCCTCCAAAGCAGGGGAGGGACAAGTGAGGTGACAGAGCATCGGAGTATTTAGCACTGGGCTTTGTGAAACCTCTGCCATTTCAGCATTTGCTCCAATGGAAACAGAATTTAGGTTGTGCTTGTGACATTTCCACTGACTTGTATTTGTGCTGAAATCTGTGTCCTTGTGCTGAAATTTGTGTCGTATGAATTGAATTGTAGATGTAAAAGATGAACAGAATGGGAGCATGCTGTATCCACACATGAGCATGTGTTCATTTTACTTAGTCATGGAGAAACAGAAACTGAAATGGTTAGAACAGCCCAAAAACAGTGAAGTATTAGTGTTATCAGCTTGTTCCCATAAGAAGGGGAAAAGATCCCGTGTGACAGAAAAGTTCTTATTTCTATGTGATAAAGAAAACTGGTCTGACTCTTCACTGTTGCGAAAGCAATGGCACGTTCAGTGAAAATGGCAGGAAATCCCACACAAATAGGGATTGCTACTGTATTGCTGAGCCCATACGCAATCTGTGGCAATAACTGCTGGAAGATGTCATGAAGATAAGTAATTCAGAAGTACTTCAGGAACTACCGGTTAATTTTATCAGTATTAATAATTGCTGATAGTTCAGCGACATCAAATGACAATCTGTACCCCAGTTTGCACCTCACGATTCAAATCATAAAGTAATAATCTGTTCAGATGTTCCACTTTCCTCTCATACTGTCACTGAGTCCAATGGATAGATGCTTTGATGCAAAATCTGCTTTCCATTTCCCTTGAATCGTGGTCATTGAACGTTACCAGACCTTGTAAACAGGTAGTGTGATCCAGTACTGCGAACCCTGCATTTCTGGAAGCACTTTTTCCATTAATCTGTAAAGTAAGATGTTTTTTCAATCTCAGAAAAAAATCTTTTCTAGCATAGAATAAGTTACTATATGTGGGGGATAACAAAATGCTGATAAGAAAAAATGGAGTTAAAGCTTCATAAATGATGACTTCTCAGAAATATTCCTGTCAAATTAATATCCAGCTTCAATCTGATTTCACTTTTTGCTGGTACAGAAATAACTTCACAGAAGCCAATAGAATAAATCCCATAGATTGTATTAGAATCGTATTTATGGCATCACATTGGATATCTCTTCTTTCTGTCTCTCATCTGCTTCTCCTGCATATAGTATGTCCTACATAGTTAAGCATAACTATAAAGAATATCAGCTGTGTTTCTGTTCTCCTTTCTCTTACAATTTTGTGTTAAGAGACAAGAAAATCATTCTCTGCAACCTAAAAATATTGCTCATTCCTCAGGATCTGGAAATAGGGTGACCATTAAGTGTCGCAGTGCTAGACTTGTTTTGTGAACGTGATTTCAGGGTTGCTAGTGTTAGGGCTAACCAGGCCTACAGAGATTGCTAGGTCTAAAACCATGTGTTACAGTGGTCAGAGTACTTTCTCATCAGAGACACGTGCAGAGGCTCTGGTGCTGTGTGGGGACAGAGGTGTGGTTCTGGGGAATGTCACTGCTGACATCCTGCAGCACACGCTGGGACAGCTGCACCCTACCGCAGTCAGTAACATAATACCCAAAGAAAGAGTACGAACAGTCATTGTTCCTTTTCTAAACCAGATGGAGCTTTCCAGCAGCTGCACGTTTTCTTACAGCCATATGTATGAATGTAGACCGTGTCTGTCAGTGTTGGTTGAGTTCAGAGTTTACATCTCATTTCAATACACCATGTTGTGTCTCCTGTGCAG
Seq C2 exon
GAACGCCCGATGCATTTTCCCAGCTGCTCACTTGCCCGTACTGTGACAGAGGGTACAAACGCTTCACCTCTCTGAAGGAACACATTAAATACCGCCATGAAAAGAACGAGGATAACTTCAGTTGCTCCCTCTGCAGTTACACGTTTGCGTATAGAACACAGCTGGACCGCCACATGACGTCGCACAAGTCGGGACGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007260:ENSGALT00000011752:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF056057=zf-Di19=WD(100=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]