BtaEX6064946 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47063878-47081088:+
Coord C1 exon
chr13:47063878-47064003
Coord A exon
chr13:47066900-47067109
Coord C2 exon
chr13:47080954-47081088
Length
210 bp
Sequences
Splice sites
3' ss Seq
TAACTGCCTCTGTCCCACAGATA
3' ss Score
10.4
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ACGTCCATACAGAAGCTGTCCAGGCTGCGCTCGCTAAACACAAAGAAAGGAAGATGGCAGTGCCTATGCCTTCCAAACGCAGGTCCTTGGTTGTGCAGACCTCGATGGACGCCTACACACCCCCAG
Seq A exon
ATACCTCCTCTGGCTCAGAAGACGAAGGCTCGGTCCAGGGTGACTCGCAGGGGACTCCCACATCCAGCCAGGGCAGCATCAACATGGAGCACTGGATCAGCCAGGCCATCCACGGCTCCACCACCTCCACCACCTCGTCGTCTTCCACCCAGAGTGGGGGCAGCGGTGCTGCCCACAGGCTGGCTGACGTCCTGGCGCAGACACACATAG
Seq C2 exon
AAAATCACTCTGCACCTCCTGACGTAACCACTTACACCTCAGAACATGCAATACAAGTAGAAAGGCCGCAAGGCTCCACGACGTCGCGGACAGCCCCGAAGTATGGCAATGCCGAGCTCATGGAGACTGGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(32.6=69.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCCATACAGAAGCTGTCC
R:
ATCGCCAGTCTCCATGAGCTC
Band lengths:
260-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]