MmuEX0014719 @ mm9
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9532498-9549564:+
Coord C1 exon
chr13:9532498-9532623
Coord A exon
chr13:9535902-9536111
Coord C2 exon
chr13:9549430-9549564
Length
210 bp
Sequences
Splice sites
3' ss Seq
AAATCTCTTCTTGAAAACAGATA
3' ss Score
3.42
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATGTTCATACAGAAGCTGTCCAGGCAGCTCTTGCTAAACACAAAGAAAGGAAAATGGCAGTACCTATGCCTTCCAAACGAAGATCCCTGGTTGTACAGACCTCCATGGATGCCTACACTCCCCCAG
Seq A exon
ATACCTCTTCCGGTTCAGAAGATGAAGGCTCAGTACAGGGTGATTCCCAGGGAACCCCCACTTCTAGCCAGGGCAGCATCAACATGGAGCATTGGATCAGCCAGGCCATCCATGGCTCTACCACATCAACAACCTCCTCCTCCTCCACGCAGAGTGGGGGCAGTGGGGCAGCACACCGGCTGGCAGATGTCATGGCCCAGACACACATAG
Seq C2 exon
AAAATCATTCTGCACCTCCTGATGTAACCACCTACACCTCAGAACACTCAATACAAGTGGAAAGGCCGCAGGGCTCCACCACATCCCGGACAGCACCAAAGTATGGCAATGCTGAGCTCATGGAGACTGGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'4-8,'4-7,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(31.9=69.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCATACAGAAGCTGTCCAGG
R:
CATCCCCAGTCTCCATGAGCT
Band lengths:
260-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: