DreEX6095475 @ danRer10
Exon Skipping
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27051787-27070523:+
Coord C1 exon
chr24:27051787-27051912
Coord A exon
chr24:27054674-27054883
Coord C2 exon
chr24:27070389-27070523
Length
210 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGCCACCCCTGACAGACA
3' ss Score
8.3
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
ATGTCCACACAGAAGCAGTACAGGCAGCTCTAGCCAAACACAAGGAGAGGAAGATGGCTGTTCCTATGCCGTCCAAACGCCGATCTCTAGTGGTCCAGACCTCTATGGATGCTTACACCCCCCCAG
Seq A exon
ACACCTCGTCCGGCTCGGAGGAGGAGGGCGGCCAGGGTGAGGGAACCCCCACCTCCAGCCAGGGCAGCGTCAGCATGGAGCACTGGATCAGTCGGGCCATCCATCAGGGATCCACCACCTCCTCCTCCTCTTCATCCACACAGAGTGGGGGCAGCGGGGCCGCCGGACGCCTGGCTGACGTTCTGGCTCAAACGCACATGGGCAAATCAG
Seq C2 exon
AGAATCACTCAGCCCCTCCGGATGTCACCACCTACACCTCCGAACATCCCGTTCAGGTGGAGAGGCCACAGGTGTCCACCGTACCCCGGACAACACCCAAATATGGCAACGCCGAACTCATGGAGACCGGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154-'4-8,'4-6,5-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(26.3=69.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCACACAGAAGCAGTACA
R:
CGTCTCCGGTCTCCATGAGTT
Band lengths:
260-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]