RnoEX0027974 @ rn6
Exon Skipping
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63675588-63691341:+
Coord C1 exon
chr17:63675588-63675713
Coord A exon
chr17:63678884-63679093
Coord C2 exon
chr17:63691207-63691341
Length
210 bp
Sequences
Splice sites
3' ss Seq
AAATCTCTTCTTGAAAACAGATA
3' ss Score
3.42
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATGTTCATACAGAAGCTGTCCAGGCAGCTCTTGCTAAACACAAAGAAAGGAAGATGGCAGTCCCCATGCCTTCCAAACGAAGATCCCTGGTTGTACAGACCTCCATGGATGCCTACACTCCCCCAG
Seq A exon
ATACCTCTTCCGGTTCAGAAGATGAAGGCTCAGTGCAGGGTGATTCCCAGGGAACCCCCACTTCTAGCCAGGGCAGCATCAACATGGAGCATTGGATCAGTCAGGCCATCCATGGCTCTACCACATCAACAACCTCCTCCTCCTCCACTCAGAGTGGGGGCAGTGGGGCAGCACACCGGCTGGCAGATGTCATGGCCCAGACACACATAG
Seq C2 exon
AAAATCATTCTGCACCTCCTGATGTAACCACATACACCTCAGAACACTCAATACAAGTGGAAAGGCCACAGGGCTCTACCACATCCCGGACAGCACCAAAGTATGGCAATGCTGAGCTCATGGAGACTGGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288-'9-12,'9-9,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(20.0=69.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCATACAGAAGCTGTCCAGG
R:
CATCCCCAGTCTCCATGAGCT
Band lengths:
260-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]