GgaEX6018466 @ galGal3
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9959605-9966648:-
Coord C1 exon
chr2:9966523-9966648
Coord A exon
chr2:9965568-9965777
Coord C2 exon
chr2:9959605-9959736
Length
210 bp
Sequences
Splice sites
3' ss Seq
AGGCTATTTTTAATTATTAGATA
3' ss Score
3.64
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
ATGTCCACACAGAAGCAGTTCAGGCAGCCCTTGCTAAACATAAAGAAAGAAAAATGGCAGTCCCCATGCCCTCAAAACGGCGTTCGTTGGTGGTGCAAACATCAATGGATGCCTATACACCTCCAG
Seq A exon
ATACTTCTTCTGGATCAGAAGATGAAGGCTCTGTGCAGGGTGACTCCCAGGGAACTCCTACCTCGAGTCAGGGGAGTATCAACATGGAACATTGGATCAGTCAAGCAATCCATGGCTCTACCACGTCAACCACTTCCTCCTCCTCAACACAAAGTGGAGGCAGTGGAGCTGCACACAGACTAGCTGATGTTATGGCTCAAACACATATAG
Seq C2 exon
AAAATCATTCTGCCCCTCCAGATGTTACCACTTACACTTCAGAACACTCAATACAAGTAGAAAGGCCACAAGGATCAACGGCACGAGTGGCACCAAAGTATGGAAATGCTGAACTTATGGAAACCGGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(44.8=69.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACAGAAGCAGTTCAGGC
R:
TCACCGGTTTCCATAAGTTCAGC
Band lengths:
252-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]