BtaEX6065681 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015058 | CDH4
Description
cadherin 4, type 1, R-cadherin (retinal) [Source:HGNC Symbol;Acc:HGNC:1763]
Coordinates
chr13:55705179-55730081:-
Coord C1 exon
chr13:55729926-55730081
Coord A exon
chr13:55725263-55725407
Coord C2 exon
chr13:55705179-55705351
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATATGTTGCTTTCTTTCTAGCTC
3' ss Score
8.37
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATCCGATCCGACAAGGACAACGACATCCCCATCCGATACAGCATCACAGGCGTGGGCGCCGACCAGCCCCCCATGGAGGTCTTCAGCATCGACTCCATGTCCGGCCGGATGTATGTCACGCGGCCCATGGACCGGGAGGAGCGAGCCTCCTACCAC
Seq A exon
CTCCGAGCACATGCTGTGGACATGAACGGCAACAAGGTGGAGAACCCCATCGACCTATACATCTACGTCATTGACATGAACGACAACCGCCCCGAGTTCCTTAACCAGGTGTACAACGGCTCCGTGGATGAAGGCTCCAAGCCAG
Seq C2 exon
GCACCTACGTGATGACAGTCACAGCCAACGACGCGGATGACGCCACCACAGCCAACGGGATGGTGCGCTACCGGATCGTGACCCAGACCCCGCAGAGCCCCTCCCAGAACATGTTCACCATCAACAGTGAGACGGGCGACATTGTGACAGTGGCTGCTGGCCTGGACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015058-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.306 C2=0.500
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(10.8=22.4)
C2:
PF0002812=Cadherin=FE(55.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGAGGTCTTCAGCATCG
R:
AGCAGCCACTGTCACAATGTC
Band lengths:
244-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]