GgaEX1014217 @ galGal4
Exon Skipping
Gene
ENSGALG00000005102 | CDH4
Description
cadherin-4 precursor [Source:RefSeq peptide;Acc:NP_001004391]
Coordinates
chr20:7909453-7929647:+
Coord C1 exon
chr20:7909453-7909608
Coord A exon
chr20:7915891-7916035
Coord C2 exon
chr20:7929475-7929647
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTCATTGTGCTTATTCCCAGCTC
3' ss Score
6.35
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATTCGTTCCGATAAGGACAAAGAGATCCATATCAGGTACAGCATCACCGGAGTGGGAGCCGACCAGCCACCAATGGAAGTCTTCAGCATTGACCCTGTGTCTGGGAGGATGTATGTGACCCGCCCTATGGACAGAGAGGAAAGAGCTTCCTACCAT
Seq A exon
CTCCGGGCTCATGCAGTGGATATGAATGGAAACAAGGTGGAGAATCCTATTGACCTTTACATCTATGTGATTGATATGAATGACAACAGACCGGAGTTTATAAACCAAGTCTATAATGGATCTGTTGATGAAGGCTCTAAACCAG
Seq C2 exon
GTACCTACGTGATGACAGTGACGGCGAATGACGCTGATGACAGCACCACAGCGAACGGGATGGTGAGATATCGGATCGTGACTCAGACCCCCCAGAGCCCATCGCAGAACATGTTCACCATTAACAGCGAGACAGGAGATATCGTCACCGTGGCTGCTGGCCTTGACAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005102_MULTIEX1-3/12=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.365 A=0.306 C2=0.586
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(10.8=22.4)
C2:
PF0002812=Cadherin=FE(55.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGGTACAGCATCACCGGA
R:
GAACATGTTCTGCGATGGGCT
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]