RnoEX6020564 @ rn6
Exon Skipping
Gene
ENSRNOG00000052405 | Cdh4
Description
cadherin 4 [Source:NCBI gene;Acc:114588]
Coordinates
chr3:175224299-175242820:+
Coord C1 exon
chr3:175224299-175224388
Coord A exon
chr3:175229089-175229233
Coord C2 exon
chr3:175242648-175242820
Length
145 bp
Sequences
Splice sites
3' ss Seq
GTGTGTCTGTTGCTCTGCAGCTC
3' ss Score
10.2
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CCCCCCATGGAGGTCTTCAACATCGACTCCATGTCTGGCCGGATGTATGTTACTCGGCCCATGGACAGAGAGGAAAGAGCCTCTTACCAC
Seq A exon
CTCCGAGCCCACGCAGTGGATATGAACGGTAACAAGGTGGAGAATCCGATTGATCTGTATATCTACGTCATCGACATGAATGACAACCGTCCCGAGTTCATCAACCAGGTCTACAACGGCTCTGTGGATGAGGGCTCCAAGCCAG
Seq C2 exon
GTACATACGTAATGACGGTCACCGCCAACGATGCAGATGACAGCACCACAGCCAACGGCATGGTGAGATACCGGATTGTCACCCAGACGCCCCAGAGCCCATCCCAGAACATGTTCACCATCAACAGTGAGACAGGGGACATCGTGACTGTGGCAGCGGGCCTGGACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052405-'6-14,'6-10,8-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.797 A=0.354 C2=0.681
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(43.9=100)
A:
PF0002812=Cadherin=PD(34.8=46.9),PF0002812=Cadherin=PU(10.8=22.4)
C2:
PF0002812=Cadherin=FE(55.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCATGGAGGTCTTCAACA
R:
CTGCCACAGTCACGATGTCC
Band lengths:
245-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]