DreEX6091465 @ danRer10
Exon Skipping
Gene
ENSDARG00000015002 | cdh4
Description
cadherin 4, type 1, R-cadherin (retinal) [Source:ZFIN;Acc:ZDB-GENE-991207-1]
Coordinates
chr11:20599319-20643083:+
Coord C1 exon
chr11:20599319-20599474
Coord A exon
chr11:20624464-20624608
Coord C2 exon
chr11:20642911-20643083
Length
145 bp
Sequences
Splice sites
3' ss Seq
TATTGTTGTCTCTTCCACAGCTC
3' ss Score
9.73
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATTCGATCGGACCAGGACAAAAAGATTGAGATCCGGTACAGTATAACAGGAGCTGGAGCAGATCAGCCTCCCAATGACGTCTTTAATATTGATCCTGTGACAGGGAAAATGTCTGTCACAAAACCTTTGGACAGAGAAGATAGAGCTTCTTACCAT
Seq A exon
CTCAAAGCTCATGCGGTGGATATTAACGGGAACCAAATGGAGCCTCCTATTGATCTGTATATTTATGTCATTGACATGAATGACAACAGACCCGAGTTTAAGAACCAGGTTTACAACGGATCAGTCGCTGAAGGCTCCAAACCTG
Seq C2 exon
GCACTTCTGTAATGCAGGTAACGGCCTTTGACGCTGACGACAGCACCACGGCGAATGGACTGGTGCACTATCGCATCCTGAGCCAGACGCCTCACATCCCCATTCCCAACATGTTTACAATTAACGGAGCCACCGGAGAGATTAGCACCATCGCAGCGGGCATCGACAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015002-'8-11,'8-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.347 C2=0.138
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(10.8=22.4)
C2:
PF0002812=Cadherin=FE(55.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCAGCCTCCCAATGAC
R:
GCGATGGTGCTAATCTCTCCG
Band lengths:
253-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]