BtaEX6091762 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021190 | CDH2
Description
Bos taurus cadherin 2, type 1, N-cadherin (neuronal) (CDH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001166492]
Coordinates
chr24:29175904-29185707:+
Coord C1 exon
chr24:29175904-29176059
Coord A exon
chr24:29182778-29182922
Coord C2 exon
chr24:29185535-29185707
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTTCTAATTACTCTTGCAGTTG
3' ss Score
8.45
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
ATCAGATCCGATAGAGATAAAAACCTTTCTCTGCGGTACAGCGTAACTGGGCCAGGAGCTGACCAGCCTCCAACTGGTATCTTCATTATCAACCCCATCTCAGGTCAGCTGTCAGTAACCAAGCCTCTGGATCGTGAGCTGATAGCCCGGTTTCAT
Seq A exon
TTGAGGGCACATGCAGTGGATATTAATGGAAACCAAGTGGAGAACCCCATCGACATTGTCATCAACGTTATTGACATGAATGATAACAGACCTGAGTTCTTACACCAGGTTTGGAATGGGACAGTTCCTGAGGGATCAAAGCCGG
Seq C2 exon
GAACATATGTGATGACGGTCACTGCGATTGATGCTGACGATCCAAATGCCCTCAATGGGATGTTGAGGTACAGAATCCTGTCCCAGGCGCCAAGCACCCCTTCGCCCAACATGTTTACAATCAACAATGAGACTGGGGACATTATCACGGTGGCAGCTGGACTTGACAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021190-'12-8,'12-7,13-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.143 C2=0.207
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(10.8=22.4)
C2:
PF0002812=Cadherin=FE(55.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGCGGTACAGCGTAACT
R:
TAAACATGTTGGGCGAAGGGG
Band lengths:
246-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]