DreEX6044338 @ danRer10
Exon Skipping
Gene
ENSDARG00000018693 | cdh2
Description
cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
Coordinates
chr20:17892204-17899651:+
Coord C1 exon
chr20:17892204-17892359
Coord A exon
chr20:17899243-17899387
Coord C2 exon
chr20:17899479-17899651
Length
145 bp
Sequences
Splice sites
3' ss Seq
AAGTGTGTTTGCATTCACAGCTG
3' ss Score
6.29
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
ATCCAGTCTGATAAGGACAAGAGCAACACGCTGCGCTACAGTGTGACCGGACCAGGAGCAGACCAAAACCCTACTGGCCTGTTTATCATCGACCCCATTTCAGGACTTCTCTCTGTCACCAAACCGCTGGACAGAGAACACATCCCCAACTTTCAT
Seq A exon
CTGCGTGCTCATGCAGTGGACATCAATGGAAACCAGATGGAGAATCCCATCGACATCATCATCAATGTCATCGATATGAATGACAACCGGCCAGAGTTCACACACCAGATCTGGAATGGGACCGTGGATGAGGGTGCCAAACCAG
Seq C2 exon
GAACATTCGTAATGACAGTGACCTCCCAGGATAAGGATGACCCAAATACAGCCAACGGGATGCTGCGATACAAAATCCTCTCTCAGACCCCAGAGAGCCCCTCATCCAACATGTTCACTATCAACAACAAAACCGGCAAAATCATCACAGTAGCTGCAGGCCTGGACCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018693-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.224 C2=0.603
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(10.8=22.4)
C2:
PF0002812=Cadherin=FE(55.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAAAACCCTACTGGCCT
R:
GCCTGCAGCTACTGTGATGAT
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]