RnoEX0019171 @ rn6
Exon Skipping
Gene
ENSRNOG00000015602 | Cdh2
Description
cadherin 2 [Source:RGD Symbol;Acc:69280]
Coordinates
chr18:8197399-8203235:-
Coord C1 exon
chr18:8203080-8203235
Coord A exon
chr18:8200819-8200963
Coord C2 exon
chr18:8197399-8197571
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGGTTGCATTTGCAGCTG
3' ss Score
9.69
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATCAGGTCTGATAGAGATAAGAACCTATCTCTGAGATACAGTGTCACTGGGCCAGGAGCTGACCAGCCTCCAACGGGCATCTTCATCATCAACCCCATCTCTGGACAACTGTCAGTCACAAAGCCTCTGGACAGAGAACTGATAGCCCGGTTTCAC
Seq A exon
CTGAGGGCACATGCAGTTGACATCAATGGCAATCAAGTGGAGAACCCCATTGACATCGTCATCAATGTCATCGACATGAATGATAACAGACCTGAGTTTCTGCACCAGGTTTGGAATGGGTCTGTTCCAGAGGGATCAAAGCCTG
Seq C2 exon
GGACGTATGTGATGACTGTCACTGCCATTGATGCAGATGACCCAAATGCCCTGAATGGGATGCTGAGGTACAGGATCCTCTCCCAGGCACCCAGCACCCCTTCTCCCAACATGTTTACAATCAACAACGAGACCGGGGACATCATCACTGTGGCAGCTGGTCTGGACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015602-'19-9,'19-8,20-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.143 C2=0.207
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(10.8=22.4)
C2:
PF0002812=Cadherin=FE(55.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAACGGGCATCTTCATC
R:
CTGCCACAGTGATGATGTCCC
Band lengths:
246-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]