GgaEX1014180 @ galGal3
Exon Skipping
Gene
ENSGALG00000015132 | CADH2_CHICK
Description
NA
Coordinates
chr2:107980909-107984149:-
Coord C1 exon
chr2:107983994-107984149
Coord A exon
chr2:107982139-107982283
Coord C2 exon
chr2:107980909-107981081
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTTATGATAATTTTCATAGCTG
3' ss Score
4.5
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATTCGGTCTGATCGTGATAAAAGCCTTTCGCTACGGTACAGTGTGACTGGCCCAGGAGCTGACCAACCTCCAACAGGAATCTTCATCATCAACCCCATCTCAGGACAGCTGTCTGTGACAAAGCCTTTAGATCGGGAGCAGATTGCTTCTTTTCAT
Seq A exon
CTGAGAGCACATGCAGTGGATGTAAATGGAAACCAGGTGGAAAATCCTATTGATATTGTGATTAACGTCATTGATATGAATGATAACAGACCTGAATTCTTGCATCAGGTTTGGAATGGGACAGTTCCTGAAGGATCAAAGCCAG
Seq C2 exon
GAACCTATGTAATGACTGTTACTGCCATCGATGCTGATGATCCCAATGCACAGAATGGGATGCTGAGATACAGAATCTTGTCACAGGCACCAAGCAGTCCCTCTCCCAACATGTTTACAATCAACAATGAGACTGGTGACATTATTACCGTAGCAGCTGGGCTCGACAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015132-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.184 C2=0.431
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(10.8=22.4)
C2:
PF0002812=Cadherin=FE(55.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTCGCTACGGTACAGTG
R:
ATGTTGGGAGAGGGACTGCTT
Band lengths:
246-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]