MmuEX7001454 @ mm10
Exon Skipping
Gene
ENSMUSG00000000305 | Cdh4
Description
cadherin 4 [Source:MGI Symbol;Acc:MGI:99218]
Coordinates
chr2:179842969-179860289:+
Coord C1 exon
chr2:179842969-179843124
Coord A exon
chr2:179847220-179847364
Coord C2 exon
chr2:179860117-179860289
Length
145 bp
Sequences
Splice sites
3' ss Seq
GTGTGTCTGTTGCTCTGCAGCTC
3' ss Score
10.2
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATCAGGTCGGACAAAGACAATGACATCCCCATCCGCTACAGCATCACGGGTGTGGGCGCCGACCAGCCCCCCATGGAGGTCTTCAACATCGACTCTATGTCTGGCCGGATGTATGTCACTCGGCCCATGGACCGGGAGGAAAGAGCCTCTTACCAT
Seq A exon
CTCCGAGCCCACGCGGTGGATATGAACGGTAACAAGGTGGAGAATCCTATTGACCTGTACATCTACGTCATTGACATGAACGACAACCGTCCCGAGTTCATCAACCAGGTCTACAACGGCTCTGTGGATGAGGGCTCCAAGCCAG
Seq C2 exon
GTACATATGTGATGACCGTCACAGCCAACGATGCAGATGATAGCACCACAGCCAATGGCATGGTGAGGTACAGAATTGTCACCCAGACACCCCAGAGCCCATCCCAGAATATGTTCACCATCAACAGTGAAACAGGGGACATCGTGACCGTGGCAGCAGGCCTGGACAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000305-'17-24,'17-16,19-24=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.337 C2=0.572
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(53.7=100)
A:
PF0002812=Cadherin=PD(24.2=46.9),PF0002812=Cadherin=PU(10.8=22.4)
C2:
PF0002812=Cadherin=FE(55.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACATCCCCATCCGCTACA
R:
TATTCTGGGATGGGCTCTGGG
Band lengths:
248-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types