BtaEX6065683 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015058 | CDH4
Description
cadherin 4, type 1, R-cadherin (retinal) [Source:HGNC Symbol;Acc:HGNC:1763]
Coordinates
chr13:55680898-55705351:-
Coord C1 exon
chr13:55705179-55705351
Coord A exon
chr13:55690357-55690494
Coord C2 exon
chr13:55680898-55681083
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTCCCCCTTGTCCCTTCTAGAAA
3' ss Score
10.66
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GCACCTACGTGATGACAGTCACAGCCAACGACGCGGATGACGCCACCACAGCCAACGGGATGGTGCGCTACCGGATCGTGACCCAGACCCCGCAGAGCCCCTCCCAGAACATGTTCACCATCAACAGTGAGACGGGCGACATTGTGACAGTGGCTGCTGGCCTGGACCGAGAG
Seq A exon
AAAGTCCAGCAGTACATGGTCATCATTCAGGCCACAGACATGGAAGGAAACCTGAACTATGGCCTCTCCAACACAGCCACCGCCATCATCACAGTGACGGACGTGAACGACAACCCACCGGAGTTCACTGCCAGCACG
Seq C2 exon
TACGCAGGGGAAGTCCCAGAAAACCGGGTGGAGATGGTGGTAGCGAATCTCACAGTGATGGACCGAGATCAGCCGCACTCCCCGAACTGGAATGCCGTCTACCGCATCATCAGTGGGGACCCCTCGGGCCACTTCAGCGTCCGCACGGACCCCACCACCAACGAGGGCATGGTCACCGTGGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015058-'7-7,'7-5,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.261 C2=0.274
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.9=100)
A:
PF0002812=Cadherin=PD(31.4=69.6)
C2:
PF0002812=Cadherin=PU(59.2=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCATCAACAGTGAGACGGG
R:
CTTAACCACGGTGACCATGCC
Band lengths:
244-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]