DreEX6044337 @ danRer10
Exon Skipping
Gene
ENSDARG00000018693 | cdh2
Description
cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
Coordinates
chr20:17899479-17901287:+
Coord C1 exon
chr20:17899479-17899651
Coord A exon
chr20:17900878-17901015
Coord C2 exon
chr20:17901102-17901287
Length
138 bp
Sequences
Splice sites
3' ss Seq
GAATTTTTTTCCCCGAGCAGAAG
3' ss Score
4.4
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GAACATTCGTAATGACAGTGACCTCCCAGGATAAGGATGACCCAAATACAGCCAACGGGATGCTGCGATACAAAATCCTCTCTCAGACCCCAGAGAGCCCCTCATCCAACATGTTCACTATCAACAACAAAACCGGCAAAATCATCACAGTAGCTGCAGGCCTGGACCGTGAG
Seq A exon
AAGGTGCCTCAGTACACCCTGATCATCCAGGCTACCGATATGGAAGGAAACCCCACGTATGGTCTGTCCAACACCGCCACTGCTGTCATACGCCTGCTGGATGTCAATGACAACGCTCCCGAGTTCACCCGAGAGACT
Seq C2 exon
TTCCATGGTGAGGTCCCAGAGAACCGTGTGAATGTGATAGTGACCAATCTCACCGTGACCGACAAAGATGAACCGGGGACTCCAGCCTGGAATGCTGTGTACCGGATCATATCCGGGGACCCGACCGGACGCTTCTCCATTCCTACTGACCCTGTCACAAATGAAGGCCTTGTCACCGTTGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018693-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=0.239 C2=0.339
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.9=100)
A:
PF0002812=Cadherin=PD(31.4=69.6)
C2:
PF0002812=Cadherin=PU(59.2=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCCCTCATCCAACATGT
R:
GGCCTTCATTTGTGACAGGGT
Band lengths:
249-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]