RnoEX0019174 @ rn6
Exon Skipping
Gene
ENSRNOG00000015602 | Cdh2
Description
cadherin 2 [Source:RGD Symbol;Acc:69280]
Coordinates
chr18:8189366-8197571:-
Coord C1 exon
chr18:8197399-8197571
Coord A exon
chr18:8190257-8190394
Coord C2 exon
chr18:8189366-8189551
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTATGTCTTTTTAGAAA
3' ss Score
9.56
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GGACGTATGTGATGACTGTCACTGCCATTGATGCAGATGACCCAAATGCCCTGAATGGGATGCTGAGGTACAGGATCCTCTCCCAGGCACCCAGCACCCCTTCTCCCAACATGTTTACAATCAACAACGAGACCGGGGACATCATCACTGTGGCAGCTGGTCTGGACCGAGAG
Seq A exon
AAAGTGCAACAGTATACGTTAATAATTCAAGCCACTGACATGGAAGGCAATCCCACTTATGGCCTTTCAAACACAGCCACAGCCGTCATCACAGTGACAGATGTCAATGACAATCCTCCAGAGTTTACTGCCATGACC
Seq C2 exon
TTCTACGGAGAAGTCCCTGAGAACAGAGTGGATGTCATTGTAGCCAACCTGACTGTCACCGACAAGGACCAGCCCCACACACCAGCCTGGAATGCGGCATACAGAATCAGTGGTGGAGACCCCACGGGAAGGTTTGCCATCCTGACAGACCCCAACAGCAATGATGGGCTAGTCACAGTGGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015602-'21-13,'21-12,22-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.239 C2=0.323
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.9=100)
A:
PF0002812=Cadherin=PD(31.4=69.6)
C2:
PF0002812=Cadherin=PU(59.2=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTGATGCAGATGACCCA
R:
TTCTGTATGCCGCATTCCAGG
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]