GgaEX1014181 @ galGal3
Exon Skipping
Gene
ENSGALG00000015132 | CADH2_CHICK
Description
NA
Coordinates
chr2:107975632-107981081:-
Coord C1 exon
chr2:107980909-107981081
Coord A exon
chr2:107976191-107976328
Coord C2 exon
chr2:107975632-107975817
Length
138 bp
Sequences
Splice sites
3' ss Seq
GATGTCATTTTGTGTTTTAGAAA
3' ss Score
9.78
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GAACCTATGTAATGACTGTTACTGCCATCGATGCTGATGATCCCAATGCACAGAATGGGATGCTGAGATACAGAATCTTGTCACAGGCACCAAGCAGTCCCTCTCCCAACATGTTTACAATCAACAATGAGACTGGTGACATTATTACCGTAGCAGCTGGGCTCGACAGAGAG
Seq A exon
AAAGTACAACAGTATACATTAATAATTCAAGCTACGGACATGGAAGGAAACCCAACATATGGTCTTTCAAACACAGCAACTGCTGTCATCACTGTGACAGATGTCAATGACAATCCTCCAGAGTTCACTGCTATGACT
Seq C2 exon
TTCTACGGTGAAGTACCAGAAAACAGAGTGGATGTCATAGTAGCTAACCTAACAGTAACAGATAAAGATCAGCCACACACGCCTGCGTGGAATGCGAGGTACCAAATGACAGGGGGAGACCCGACAGGCCAGTTTACTATCCTGACCGATCCAAATAGCAATGATGGGTTGGTAACTGTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015132-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=0.370 C2=0.516
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.9=100)
A:
PF0002812=Cadherin=PD(31.4=69.6)
C2:
PF0002812=Cadherin=PU(59.2=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCGATGCTGATGATCCC
R:
TTTGGTACCTCGCATTCCACG
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]