BtaEX6091760 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021190 | CDH2
Description
Bos taurus cadherin 2, type 1, N-cadherin (neuronal) (CDH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001166492]
Coordinates
chr24:29185535-29195568:+
Coord C1 exon
chr24:29185535-29185707
Coord A exon
chr24:29194549-29194686
Coord C2 exon
chr24:29195383-29195568
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTATGTCTTTTTAGAAA
3' ss Score
9.56
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GAACATATGTGATGACGGTCACTGCGATTGATGCTGACGATCCAAATGCCCTCAATGGGATGTTGAGGTACAGAATCCTGTCCCAGGCGCCAAGCACCCCTTCGCCCAACATGTTTACAATCAACAATGAGACTGGGGACATTATCACGGTGGCAGCTGGACTTGACAGAGAA
Seq A exon
AAAGTACAACAGTATACGTTAATAATTCAAGCTACAGACATGGAAGGCAATCCCACATATGGCCTTTCCAACACAGCCACGGCTGTCATCACGGTGACAGATGTCAACGACAATCCTCCGGAGTTTACTGCCATGACG
Seq C2 exon
TTCTATGGTGAAGTCCCTGAAAACAGGGTAGATGTCATCGTCGCTAATCTAACAGTGACAGATAAGGATCAGCCCCACACACCGGCCTGGAACGCCATCTACAGAATCAGCGGTGGAGACCCCGCCGGCCGCTTTGCCATTCAAACTGACCCCAACAGCAACGACGGTTTAGTCACCGTAGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021190-'14-10,'14-9,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.239 C2=0.306
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.9=100)
A:
PF0002812=Cadherin=PD(31.4=69.6)
C2:
PF0002812=Cadherin=PU(59.2=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTTCGCCCAACATGTTTA
R:
GGTGACTAAACCGTCGTTGCT
Band lengths:
254-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]