MmuEX6000401 @ mm10
Exon Skipping
Gene
ENSMUSG00000024304 | Cdh2
Description
cadherin 2 [Source:MGI Symbol;Acc:MGI:88355]
Coordinates
chr18:16632204-16640594:-
Coord C1 exon
chr18:16640422-16640594
Coord A exon
chr18:16633008-16633145
Coord C2 exon
chr18:16632204-16632389
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTTTGTCTTTTTAGAAA
3' ss Score
10.98
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GGACGTATGTGATGACGGTCACTGCCATTGATGCGGATGATCCAAATGCCCTGAATGGAATGCTGCGGTACAGGATCCTGTCCCAGGCGCCCAGCACACCTTCACCCAACATGTTTACAATCAACAATGAGACTGGGGACATCATCACTGTGGCAGCTGGTCTGGATCGAGAG
Seq A exon
AAAGTGCAACAGTATACGTTAATAATTCAAGCCACAGACATGGAAGGCAATCCCACTTATGGCCTTTCAAACACAGCCACAGCCGTCATCACGGTGACAGATGTCAATGACAATCCTCCAGAGTTTACTGCCATGACT
Seq C2 exon
TTCTACGGAGAAGTCCCTGAGAACAGGGTGGACGTCATTGTAGCCAACCTAACTGTCACGGACAAAGATCAGCCCCACACGCCGGCCTGGAATGCGGCATACAGAATCAGTGGTGGAGACCCTACAGGAAGGTTTGCCATCCTGACAGACCCCAACAGCAATGATGGGCTAGTCACAGTGGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024304-'28-16,'28-15,30-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.239 C2=0.323
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.9=100)
A:
PF0002812=Cadherin=PD(31.4=69.6)
C2:
PF0002812=Cadherin=PU(59.2=98.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACACCTTCACCCAACATG
R:
CATTGCTGTTGGGGTCTGTCA
Band lengths:
244-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types