HsaEX6038467 @ hg19
Exon Skipping
Gene
ENSG00000170558 | CDH2
Description
cadherin 2, type 1, N-cadherin (neuronal) [Source:HGNC Symbol;Acc:1759]
Coordinates
chr18:25572619-25583133:-
Coord C1 exon
chr18:25582961-25583133
Coord A exon
chr18:25573464-25573601
Coord C2 exon
chr18:25572619-25572804
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTATGTCTTTTTAGAAA
3' ss Score
9.56
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GAACATATGTGATGACCGTAACAGCAATTGATGCTGACGATCCCAATGCCCTCAATGGGATGTTGAGGTACAGAATCGTGTCTCAGGCTCCAAGCACCCCTTCACCCAACATGTTTACAATCAACAATGAGACTGGTGACATCATCACAGTGGCAGCTGGACTTGATCGAGAA
Seq A exon
AAAGTGCAACAGTATACGTTAATAATTCAAGCTACAGACATGGAAGGCAATCCCACATATGGCCTTTCAAACACAGCCACGGCCGTCATCACAGTGACAGATGTCAATGACAATCCTCCAGAGTTTACTGCCATGACG
Seq C2 exon
TTTTATGGTGAAGTTCCTGAGAACAGGGTAGACATCATAGTAGCTAATCTAACTGTGACCGATAAGGATCAACCCCATACACCAGCCTGGAACGCAGTGTACAGAATCAGTGGCGGAGATCCTACTGGACGGTTCGCCATCCAGACCGACCCAAACAGCAACGACGGGTTAGTCACCGTGGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170558-'13-12,'13-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.239 C2=0.355
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.9=100)
A:
PF0002812=Cadherin=PD(31.4=69.6)
C2:
PF0002812=Cadherin=PU(59.2=98.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCCTTCACCCAACATGTT
R:
GACTAACCCGTCGTTGCTGTT
Band lengths:
253-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)