HsaEX6038467 @ hg38
Exon Skipping
Gene
ENSG00000170558 | CDH2
Description
cadherin 2 [Source:HGNC Symbol;Acc:HGNC:1759]
Coordinates
chr18:27992655-28003169:-
Coord C1 exon
chr18:28002997-28003169
Coord A exon
chr18:27993500-27993637
Coord C2 exon
chr18:27992655-27992840
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTATGTCTTTTTAGAAA
3' ss Score
9.56
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GAACATATGTGATGACCGTAACAGCAATTGATGCTGACGATCCCAATGCCCTCAATGGGATGTTGAGGTACAGAATCGTGTCTCAGGCTCCAAGCACCCCTTCACCCAACATGTTTACAATCAACAATGAGACTGGTGACATCATCACAGTGGCAGCTGGACTTGATCGAGAA
Seq A exon
AAAGTGCAACAGTATACGTTAATAATTCAAGCTACAGACATGGAAGGCAATCCCACATATGGCCTTTCAAACACAGCCACGGCCGTCATCACAGTGACAGATGTCAATGACAATCCTCCAGAGTTTACTGCCATGACG
Seq C2 exon
TTTTATGGTGAAGTTCCTGAGAACAGGGTAGACATCATAGTAGCTAATCTAACTGTGACCGATAAGGATCAACCCCATACACCAGCCTGGAACGCAGTGTACAGAATCAGTGGCGGAGATCCTACTGGACGGTTCGCCATCCAGACCGACCCAAACAGCAACGACGGGTTAGTCACCGTGGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170558-'31-25,'31-24,34-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.250 C2=0.363
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.9=100)
A:
PF0002812=Cadherin=PD(31.4=69.6)
C2:
PF0002812=Cadherin=PU(59.2=98.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCCTTCACCCAACATGTT
R:
GACTAACCCGTCGTTGCTGTT
Band lengths:
253-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains