MmuEX1006318 @ mm10
Exon Skipping
Gene
ENSMUSG00000000305 | Cdh4
Description
cadherin 4 [Source:MGI Symbol;Acc:MGI:99218]
Coordinates
chr2:179860117-179881995:+
Coord C1 exon
chr2:179860117-179860289
Coord A exon
chr2:179874072-179874209
Coord C2 exon
chr2:179881810-179881995
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACGCTGTCTTTCCCCTCCAGAAA
3' ss Score
11.06
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTACATATGTGATGACCGTCACAGCCAACGATGCAGATGATAGCACCACAGCCAATGGCATGGTGAGGTACAGAATTGTCACCCAGACACCCCAGAGCCCATCCCAGAATATGTTCACCATCAACAGTGAAACAGGGGACATCGTGACCGTGGCAGCAGGCCTGGACAGAGAG
Seq A exon
AAAGTCCAGCAGTACACCGTCATCGTCCAGGCCACTGACATGGAAGGAAACCTTAATTATGGTCTCTCGAACACAGCCACTGCCATCATCACGGTGACAGACGTAAATGACAACCCTCCGGAATTCACCACAAGCACA
Seq C2 exon
TTTGCAGGAGAGGTTCCTGAGAACCGTATAGAGACAGTAGTAGCCAACCTCACGGTGATGGACCGAGACCAGCCCCACTCACCCAACTGGAACGCCGTCTACCGAATCATAAGTGGGGACCCCTCTGGGCACTTCAGTGTCCGCACAGACCCCGTGACCAATGAGGGCATGGTCACCGTGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000305-'22-24,'22-21,24-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.572 A=0.291 C2=0.410
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.9=100)
A:
PF0002812=Cadherin=PD(31.4=69.6)
C2:
PF0002812=Cadherin=PU(59.2=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAGCCCATCCCAGAATA
R:
GACCATGCCCTCATTGGTCAC
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types