DreEX6091463 @ danRer10
Exon Skipping
Gene
ENSDARG00000015002 | cdh4
Description
cadherin 4, type 1, R-cadherin (retinal) [Source:ZFIN;Acc:ZDB-GENE-991207-1]
Coordinates
chr11:20642911-20686765:+
Coord C1 exon
chr11:20642911-20643083
Coord A exon
chr11:20670072-20670209
Coord C2 exon
chr11:20686580-20686765
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTGTTGTTTCAGAAA
3' ss Score
10.26
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GCACTTCTGTAATGCAGGTAACGGCCTTTGACGCTGACGACAGCACCACGGCGAATGGACTGGTGCACTATCGCATCCTGAGCCAGACGCCTCACATCCCCATTCCCAACATGTTTACAATTAACGGAGCCACCGGAGAGATTAGCACCATCGCAGCGGGCATCGACAGAGAG
Seq A exon
AAAGTCTCTCAGTACACCGTCATAGTGCAGGCCACTGATATGGAGGGAAACTTGAACTTCGGTTTGTCCAACACCGCCACAGCCCTCATCAGCATTTCTGACATCAATGACAACCCGCCAGAGCTGGACTCTAAAACT
Seq C2 exon
TTTCTAGGAGAGGTCCCGGAGAATGCTGTGGGTGTTGTGGTGGCCAATTTGACAGTCAGAGACAAGGATCAGCCTCATACACCCAACTGGAATGCTGTATATAGGATCACAGGAGGAGACCCGTTGGGCCATTTCACCATACGCACTGATGAAATCACCAATGATGGCAGGGTCATAGTGGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015002-'11-13,'11-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.109 C2=0.194
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.9=100)
A:
PF0002812=Cadherin=PD(31.4=69.6)
C2:
PF0002812=Cadherin=PU(59.2=98.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCACTATCGCATCCTGAG
R:
TATGGTGAAATGGCCCAACGG
Band lengths:
253-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]