RnoEX0019218 @ rn6
Exon Skipping
Gene
ENSRNOG00000052405 | Cdh4
Description
cadherin 4 [Source:NCBI gene;Acc:114588]
Coordinates
chr3:175242648-175265242:+
Coord C1 exon
chr3:175242648-175242820
Coord A exon
chr3:175257442-175257579
Coord C2 exon
chr3:175265057-175265242
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACACTGTCTGTCCCCTCCAGAAA
3' ss Score
10.27
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTACATACGTAATGACGGTCACCGCCAACGATGCAGATGACAGCACCACAGCCAACGGCATGGTGAGATACCGGATTGTCACCCAGACGCCCCAGAGCCCATCCCAGAACATGTTCACCATCAACAGTGAGACAGGGGACATCGTGACTGTGGCAGCGGGCCTGGACCGAGAG
Seq A exon
AAAGTCCAGCAGTACACGGTCATCGTCCAGGCCACTGACATGGAAGGAAACCTTAATTATGGTCTCTCGAACACGGCCACGGCCATCATCACGGTGACAGACGTAAATGACAACCCTCCAGAATTCACCACCAGCACA
Seq C2 exon
TTTGCAGGAGAGGTCCCCGAAAACCGTATAGAGACAGTAGTGGCCAACCTCACAGTGATGGACCGAGACCAGCCCCACTCACCCAACTGGAATGCTGTCTACCGAATCATAAGTGGAGACCCCTCCGGGCACTTCAGTGTCCGCACAGACCCTGTGACCAATGAGGGCATGGTCACCGTGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052405-'11-17,'11-16,12-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.681 A=0.283 C2=0.371
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.9=100)
A:
PF0002812=Cadherin=PD(31.4=69.6)
C2:
PF0002812=Cadherin=PU(59.2=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACGATGCAGATGACAGCA
R:
CATTCCAGTTGGGTGAGTGGG
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]