GgaEX1014219 @ galGal4
Exon Skipping
Gene
ENSGALG00000005102 | CDH4
Description
cadherin-4 precursor [Source:RefSeq peptide;Acc:NP_001004391]
Coordinates
chr20:7929475-7978544:+
Coord C1 exon
chr20:7929475-7929647
Coord A exon
chr20:7961450-7961587
Coord C2 exon
chr20:7978359-7978544
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTTTCCTCTCCAGAAA
3' ss Score
11.52
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTACCTACGTGATGACAGTGACGGCGAATGACGCTGATGACAGCACCACAGCGAACGGGATGGTGAGATATCGGATCGTGACTCAGACCCCCCAGAGCCCATCGCAGAACATGTTCACCATTAACAGCGAGACAGGAGATATCGTCACCGTGGCTGCTGGCCTTGACAGGGAG
Seq A exon
AAAGTTCAGCAGTATATGGTCATCGTTCAAGCCACAGATATGGAAGGCAATCTTAACTATGGTCTCTCAAACACAGCGACTGCGATCATTACGGTGACAGATGTGAATGACAACCCCCCTGAATTCACGACCAGCACT
Seq C2 exon
TATTCGGGGGAAGTTCCTGAGAACAGAGTGGAGGTTGTGGTTGCAAATTTGACAGTGATGGACCGGGACCAGCCTCACTCTCCCAACTGGAATGCCATCTACCGCATCATCAGTGGGGACCCCTCTGGCCACTTCACCATCCGGACAGACCCCGTCACCAATGAGGGCATGGTAACTGTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005102_MULTIEX1-5/12=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=0.283 C2=0.226
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.9=100)
A:
PF0002812=Cadherin=PD(31.4=69.6)
C2:
PF0002812=Cadherin=PU(59.2=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGAACGGGATGGTGAGATA
R:
CCCCACTGATGATGCGGTAGA
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]