BtaEX6065732 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011940 | ZNF831
Description
zinc finger protein 831 [Source:HGNC Symbol;Acc:HGNC:16167]
Coordinates
chr13:57657077-57719685:-
Coord C1 exon
chr13:57719546-57719685
Coord A exon
chr13:57707151-57707302
Coord C2 exon
chr13:57657077-57657237
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTTCTTGTTCCCCAGGTA
3' ss Score
11.4
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTCTCTGACCCAACAGCCCGAGGGATGCTGTCCCGGGACCGGGTGTCTGAGCCAGAGTGGAAGAAACGACGGTCTCGTAGAAGAGCGAAGATGCCTCGTGGGAGCAGCAGGTGGAAACATCTGAGCACCCACTCTAAAAG
Seq A exon
GTACAGAGGGAATTTCTTGCAGAGCCGTGTCCAGCTGAGAGTCACTAGACTACGGAAACCACACTGGGTTCTGAGAAAAGATGGCCACCCACCCCGAGCCAAGGGGCCGGACCCATGCAGGACCCAAGGGCAGGCTTCTTCAGAGATGGCAG
Seq C2 exon
GTGTGAATCCGTCAGGGGAGCCCTCTTGTGTCACCTCAGAATCATATGTTTGCATTGAGAACAGAGAGCAGGAGGAAGAGGAGAGCGGACACGTCTCCAGGAGTTTCTGTCCTAACACAAGCTTAAGAACCATCGGGGACACAGACAGACCGATCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011940-'1-3,'1-1,2-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=0.731 C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGTGGAAGAAACGACGG
R:
TTTGCGATCGGTCTGTCTGTG
Band lengths:
249-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]