MmuEX0053652 @ mm10
Exon Skipping
Gene
ENSMUSG00000050600 | Zfp831
Description
zinc finger protein 831 [Source:MGI Symbol;Acc:MGI:3641861]
Coordinates
chr2:174648081-174704180:+
Coord C1 exon
chr2:174648081-174648223
Coord A exon
chr2:174657673-174657842
Coord C2 exon
chr2:174704023-174704180
Length
170 bp
Sequences
Splice sites
3' ss Seq
TGCACTGCTCTGCCCCACAGGTG
3' ss Score
11.33
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
CTTCCCTATCCATCAGTCCCAGAGCTGAGGGCTGAGGACCAAGTATCCAGGCCACGGTGGAAGAAAGAACAACTATGGCGTAGAAAGGTGAAGACATCTCGTGAAAACACCAAACAGAAGAAACTGAGGCTTCATTCTAAAAG
Seq A exon
GTGTGAAGGGAGTTTCTGGCAGAGAGCCAAACGCCTGTGCAAGCCACCCTGGTTGCCAAGAAGAAGCTGTCTCCCCCACCGACTTGAGGGGTTAGAGCCACGGGGGACCCTTGGGAGGAGTTCGGCAGAAGTGGCAGGTAACATTTTCCTCGGTGGTGAATCCGGACTAG
Seq C2 exon
GTCGAAATGTACAAGGGGAGCCATCTTGTGCCAGCAAAGACTTGTCTGTGTCTCATGGGAACAAAGAAAAGGAAGGTGACTGTAGTCAGACTTCGAGACCCATGTCTCCGGGCATGAGCTCAAAAACCATGTTGGAAATGGACAAATCAGCTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050600_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.861 A=0.479 C2=0.925
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000059452fB20025
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTGAGGACCAAGTATCC
R:
TTTTTGAGCTCATGCCCGGAG
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types