HsaEX6078887 @ hg19
Exon Skipping
Gene
ENSG00000124203 | ZNF831
Description
zinc finger protein 831 [Source:HGNC Symbol;Acc:16167]
Coordinates
chr20:57770924-57828193:+
Coord C1 exon
chr20:57770924-57771060
Coord A exon
chr20:57781960-57782111
Coord C2 exon
chr20:57828033-57828193
Length
152 bp
Sequences
Splice sites
3' ss Seq
CATGCTTCTCTCTTCTACAGGTA
3' ss Score
13.32
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TTCTCCTACCCAACAGTCCCAGGGGTGATGCCCCAGCACCAGGTGTCTGAGCCAGAATGGAAGAAAGGCCTGCCTTGGAGGGCAAAGATGTCTCGTGGGAACAGCAAGCAGAGAAAACTGAAGATCAACCCTAAAAG
Seq A exon
GTACAAAGGGAATTTCTTGCAGAGCTGTGTTCAGCTGAGAGCCAGTAGACTTCGCACACCAACCTGGGTGCGAAGAAGAAGCCGCCACCCTCCCGCACTTGAGGGACTGAAGCCATGCAGGACCCCTGGGCAGACCTCTTCAGAAATAGCAG
Seq C2 exon
GTCTGAATCTGCAAGAGGAGCCATCTTGTGCCACCTCAGAATCACCTCCTTGTTGTGGGAAGGAAGAGAAGAAGGAAGGTGACTGCAGACAAACCTTAGGAACCCTCTCTCTTGGTACAAGTTCAAGAATTGTCAGGGAAATGGACAAACGAACTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124203-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=0.615 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGTGTCTGAGCCAGAAT
R:
TCGTTTGTCCATTTCCCTGACA
Band lengths:
252-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)